Publications by authors named "Yuichi Wakana"

The bacterium Legionella pneumophila secretes numerous effector proteins that manipulate endoplasmic reticulum (ER)-derived vesicles to form the Legionella-containing vacuole (LCV). Despite extensive studies, whether the LCV membrane is separate from or connected to the host ER network remains unclear. Here, we show that the smooth ER (sER) is closely associated with the LCV early in infection.

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Article Synopsis
  • The bacterium uses its Dot/Icm secretion system to inject about 330 effector proteins into host cells, forming a structure called the LCV.
  • Research shows that during early infection, the LCV closely interacts with the smooth endoplasmic reticulum (sER), but over time, it develops into a unique membrane distinct from the host's endoplasmic reticulum (ER).
  • The protein BAP31 helps facilitate this transition by acting as a bridge between the sER and rough ER (rER), while a newly identified effector, Lpg1152, is crucial for recruiting BAP31 to assist this transformation.
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Secretory proteins are sorted at the -Golgi network (TGN) for export into specific transport carriers. However, the molecular players involved in this fundamental process remain largely elusive. Here, we identified the human transmembrane protein TGN46 as a receptor for the export of secretory cargo protein PAUF in CARTS - a class of protein kinase D-dependent TGN-to-plasma membrane carriers.

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  • * Reducing MAP1B levels in TNBC cells hinders their ability to migrate and invade, which negatively affects tumor growth.
  • * MAP1B interacts with proteins involved in invadopodia formation and microtubules, suggesting it plays a central role in promoting cancer aggressiveness in TNBC, indicating a potential target for diagnosis and treatment.
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CARTS Formation Assay.

Methods Mol Biol

December 2022

Article Synopsis
  • Sorting and transport of proteins from the trans-Golgi network (TGN) to the plasma membrane involves carriers known as CARTS, which are influenced by membrane contact sites between the Golgi and endoplasmic reticulum (ER).
  • A method utilizing fluorescence microscopy is outlined to visualize CARTS formation, using a synchronized cargo export system and a temperature-sensitive blockade.
  • The process includes incubating cells to release the blockade, allowing observation of CARTS formation, along with a workflow for quantifying this process using ImageJ software.
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Mammalian syntaxin 17 (Stx17) has several roles in processes other than membrane fusion, including in mitochondrial division, autophagosome formation and lipid droplet expansion. In contrast to conventional syntaxins, Stx17 has a long C-terminal hydrophobic region with a hairpin-like structure flanked by a basic amino acid-enriched C-terminal tail. Although Stx17 is one of the six ancient SNAREs and is present in diverse eukaryotic organisms, it has been lost in multiple lineages during evolution.

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Membrane trafficking is essential for processing and transport of proteins and lipids and to establish cell compartmentation and tissue organization. Cells respond to their needs and control the quantity and quality of protein secretion accordingly. In this review, we focus on a particular membrane trafficking route from the -Golgi network (TGN) to the cell surface: protein kinase D (PKD)-dependent pathway for constitutive secretion mediated by carriers of the TGN to the cell surface (CARTS).

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  • SCAP plays a crucial role in cholesterol metabolism by activating SREBP transcription factors in response to low cholesterol levels, leading to gene expression for cholesterol synthesis.
  • In cholesterol-rich conditions, SCAP interacts with the VAP-OSBP complex at ER-Golgi membrane contact sites to transport cholesterol and phosphatidylinositol 4-phosphate (PI4P), affecting lipid turnover.
  • Knocking down SCAP disrupts the distribution of the VAP-OSBP complex and hinders the formation of transport carriers (CARTS) necessary for Golgi function, which can be reversed by restoring SCAP function.
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  • Metastasis is a leading cause of cancer deaths and is heavily influenced by the protease MT1-MMP, which plays a key role in local invasion and spreading of cancer cells.
  • The transport of MT1-MMP from the endoplasmic reticulum to invadopodia is complex and involves the diversion of a protein called Bet1, which typically helps in transporting other proteins to the Golgi apparatus.
  • The study finds that MT1-MMP's interaction with Bet1 and other proteins facilitates its movement to the cell surface, enhancing its role in cancer cell invasiveness.
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PGAM5, a mitochondrial protein phosphatase that is genetically and biochemically linked to PINK1, facilitates mitochondrial division by dephosphorylating the mitochondrial fission factor Drp1. At the onset of mitophagy, PGAM5 is cleaved by PARL, a rhomboid protease that degrades PINK1 in healthy cells, and the cleaved form facilitates the engulfment of damaged mitochondria by autophagosomes by dephosphorylating the mitophagy receptor FUNDC1. Here, we show that the function and localization of PGAM5 are regulated by syntaxin 17 (Stx17), a mitochondria-associated membrane/mitochondria protein implicated in mitochondrial dynamics in fed cells and autophagy in starved cells.

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  • Stx17 is a protein that helps regulate mitochondrial fission by interacting with Drp1 at the endoplasmic reticulum-mitochondria interface in fed cells.
  • When cells are starved, Stx17 changes its interactions by leaving microtubules and Drp1 to bind with Atg14L, aiding in the formation of autophagosomes, which are essential for cellular recycling.
  • The study identifies MAP1B-LC1 as a key player that connects Stx17 and microtubules, and its dephosphorylation during starvation allows Stx17 to switch partners for autophagosome formation.
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  • During macrophage infection, Legionella pneumophila releases proteins that transform the host's vacuoles into structures similar to the endoplasmic reticulum (ER) to replicate.
  • The key effector protein Lpg1137 acts as a serine protease, specifically targeting and cleaving syntaxin 17, a protein crucial for mitochondrial function and dynamics.
  • This cleavage disrupts communication between the ER and mitochondria, ultimately inhibiting autophagy and preventing apoptosis in infected cells.
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  • VAP is a crucial membrane protein in the endoplasmic reticulum that facilitates the transfer of ceramide and cholesterol to the Golgi complex, influencing lipid metabolism.
  • It interacts with other proteins and is essential for the processing and secretion of specific factors, such as pancreatic adenocarcinoma up-regulated factor, via specialized transport carriers called CARTS.
  • Depletion of VAP disrupts diacylglycerol levels and CARTS formation, suggesting that the dynamics of ER-Golgi contacts are vital for lipid metabolism and the production of transport carriers.
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  • SNARE proteins play a crucial role in membrane fusion by assembling into complexes on target membranes and transport vesicles.
  • NSF and α-SNAP help disassemble these complexes for reuse, but the function of γ-SNAP in this process was previously unclear.
  • This study reveals that γ-SNAP regulates the trafficking of specific proteins like the EGF receptor and transferrin in endosomes, affecting their distribution and degradation within cells.
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Recent evidence suggests that endoplasmic reticulum (ER) tubules mark the sites where the GTPase Drp1 promotes mitochondrial fission via a largely unknown mechanism. Here, we show that the SNARE protein syntaxin 17 (Syn17) is present on raft-like structures of ER-mitochondria contact sites and promotes mitochondrial fission by determining Drp1 localization and activity. The hairpin-like C-terminal hydrophobic domain, including Lys-254, but not the SNARE domain, is important for this regulation.

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  • The morphology and distribution of the endoplasmic reticulum (ER) in mammalian cells are influenced by how ER membrane proteins interact with microtubules (MTs).
  • The protein CLIMP-63 is important for maintaining the structure of rough ER and its static connection with MTs, while the syntaxin 5 variant Syn5L also plays a role by interacting with both CLIMP-63 and MTs.
  • New findings reveal that VIMP, another protein, influences ER structure and distribution by interacting with MTs, but does not connect with all MT-binding proteins, indicating that various proteins are involved in organizing different ER regions.
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  • The process of docking and fusion of transport vesicles with target membranes involves initial contact mediated by tethering factors and subsequent membrane fusion catalyzed by SNARE proteins.
  • CATCHR family complexes, which include Dsl1, COG, exocyst, and GARP, have low sequence homology but are involved in various membrane trafficking pathways.
  • The study reveals that RINT-1, similar to yeast Tip20, plays an essential role in both retrograde transport and endosome-to-trans-Golgi network trafficking, highlighting its coordination with the COG complex in mammals.
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Here we report that the kinesin-5 motor Klp61F, which is known for its role in bipolar spindle formation in mitosis, is required for protein transport from the Golgi complex to the cell surface in Drosophila S2 cells. Disrupting the function of its mammalian orthologue, Eg5, in HeLa cells inhibited secretion of a protein called pancreatic adenocarcinoma up-regulated factor (PAUF) but, surprisingly, not the trafficking of vesicular stomatitis virus G protein (VSV-G) to the cell surface. We have previously reported that PAUF is transported from the trans-Golgi network (TGN) to the cell surface in specific carriers called CARTS that exclude VSV-G.

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The SNARE protein syntaxin 5 exists as long (42 kDa) and short (35 kDa) isoforms. The short form is principally localized in the Golgi complex, whereas the long form resides not only in the Golgi but also in the endoplasmic reticulum (ER). Although the Golgi-localized short form has been extensively investigated, little is known about the long form.

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We have isolated a membrane fraction enriched in a class of transport carriers that form at the trans Golgi network (TGN) and are destined for the cell surface in HeLa cells. Protein kinase D (PKD) is required for the biogenesis of these carriers that contain myosin II, Rab6a, Rab8a, and synaptotagmin II, as well as a number of secretory and plasma membrane-specific cargoes. Our findings reveal a requirement for myosin II in the migration of these transport carriers but not in their biogenesis per se.

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Actin-severing proteins ADF/cofilin are required for the sorting of secretory cargo at the trans-Golgi network (TGN) in mammalian cells. How do these cytoplasmic proteins interact with the cargoes in the lumen of the TGN? Put simply, how are these two sets of proteins connected across the TGN membrane? Mass spectrometry of cofilin1 immunoprecipitated from HeLa cells revealed the presence of actin and the Ca(2+) ATPase SPCA1. Moreover, cofilin1 was localized to the TGN and bound to SPCA1 via dynamic actin.

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Certain endoplasmic reticulum (ER)-associated degradation (ERAD) substrates with transmembrane domains are segregated from other ER proteins and sorted into a juxtanuclear subcompartment, known as the ER quality control compartment. Bap31 is an ER protein with three transmembrane domains, and it is assumed to be a cargo receptor for ER export of some transmembrane proteins, especially those prone to ERAD. Here, we show that Bap31 is a component of the ER quality control compartment and that it moves between the peripheral ER and a juxtanuclear ER or ER-related compartment distinct from the conventional ER-Golgi intermediate compartment.

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Reticulons (RTNs) constitute a family of endoplasmic reticulum (ER)-associated proteins with a reticular distribution. Despite the implication of their neuronal isoforms in axonal regeneration, the function of their widely expressed isoforms is largely unknown. In this study, we examined the role of the ubiquitously expressed RTN3 in membrane trafficking.

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Synopsis of recent research by authors named "Yuichi Wakana"

  • Recent research by Yuichi Wakana focuses on the intricate mechanisms of cellular transport, particularly involving the endoplasmic reticulum (ER) and the Golgi network, highlighting significant processes like the creation of unique ER niches by intracellular bacteria and the sorting of secretory proteins.
  • His studies also emphasize the role of proteins such as MAP1B in cancer biology, specifically its correlation with aggressive forms of triple-negative breast cancer (TNBC), suggesting potential avenues for understanding tumorigenesis and metastasis.
  • Furthermore, Wakana explores the interplay between membrane contact sites and various proteins in facilitating transport processes from the Golgi to the plasma membrane, shedding light on the molecular players involved in these critical pathways.