Publications by authors named "Yuhui Dong"

Walnut anthracnose induced by Colletotrichum gloeosporioides is a devastating disease that seriously threatens walnut cultivation. Screening novel resistance genes and exploring the molecular mechanisms are essential for disease-resistant genetic improvement of walnut. We conducted a genome-wide association studies of disease resistance traits based on the relative resistance index and single nucleotide polymorphisms (SNPs) obtained from 182 resequenced walnut accessions and 10 loci and corresponding candidate genes associated with resistance against C.

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Cyanobacterial cytochrome c6 (Cyt c6) is crucial for electron transfer between the cytochrome b6f complex and photosystem I (PSI), playing a key role in photosynthesis and enhancing adaptation to extreme environments. This study investigates the high-resolution crystal structures of Cyt c6 from PCC 7942 and PCC 6803, focusing on its dimerization mechanisms and functional implications for photosynthesis. Cyt c6 was expressed in using a dual-plasmid co-expression system and characterized in both oxidized and reduced states.

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Solid tumors cause 90% of cancers and remain the primary cause of mortality. However, treating solid tumors presents significant challenges due to the complex tumor microenvironment and drug resistance, leading to inadequate treatment targeting and severe side effects. Surgery, radiotherapy, and chemotherapy Although it is an effective method for the treatment of solid tumors, it can lead to organ dysfunction and affect patient prognosis.

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Background: Pain is a prevalent symptom among patients with cancer, significantly impacting their health and quality of life. Stellate ganglion block (SGB) has been employed as a diagnostic, prognostic, or therapeutic intervention for various pain syndromes. This systematic review and meta-analysis aimed to examine the effects of ultrasound-guided SGB on postoperative recovery quality and other functional indicators following cancer surgery.

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Article Synopsis
  • Ash trees show significant genetic diversity and adaptation to different environments, especially their ability to tolerate salt, making it important to study their genetics for breeding purposes.
  • Researchers have created 11 detailed genome assemblies for various Fraxinus species, uncovering important historical genetic events and variations that contribute to salt tolerance.
  • They identified specific genes (like FvbHLH85 and FvSWEET5) linked to salt tolerance through breeding experiments, providing important insights for improving salt resistance in ash trees.
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Matrix metalloproteinases (MMPs) are involved in the breakdown of lung extracellular matrix and the consequent release of Mycobacterium tuberculosis into the airways. Recent studies indicate that kallikrein-related peptidase 12 (KLK12) regulate MMP-1 and MMP-9, suggesting that targeting the KLK12 gene could be a promising tuberculosis (TB) treatment. To maximise therapeutic potential, this strategy of silencing KLK12 needs to be delivered to the pathogenic cell population while preserving the immunoprotective and tissue homeostatic functions of other lung macrophages.

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Unlabelled: 2C is a highly conserved picornaviral non-structural protein with ATPase activity and plays a multifunctional role in the viral life cycle as a promising target for anti-picornavirus drug development. While the structure-function of enteroviral 2Cs have been well studied, cardioviral 2Cs remain largely uncharacterized. Here, an endogenous ATP molecule was identified in the crystal structure of 2C from encephalomyocarditis virus (EMCV, Cardiovirus A).

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  • - Yellowhorn (Xanthoceras sorbifolium) is a shrub or small tree from China known for its high oil content in kernels, which includes neuroic acid, and has been cultivated in northern China recently.
  • - A collar rot disease was identified in 2019 affecting yellowhorn plants in Shandong Province, leading to significant plant damage and a disease incidence rate between 35-48%.
  • - Pathogen analysis showed an 83.3% recovery rate of Fusarium species from infected plants, with specific morphological characteristics and genetic data supporting its identification.
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  • - Walnut anthracnose significantly harms walnut yield and quality, threatening the industry, while the WRKY transcription factor JrWRKY4 plays a key role in plant-pathogen interactions.
  • - Researchers identified JrWRKY4 as a nuclear transcription activator that enhances walnut resistance to anthracnose through various molecular mechanisms, including direct interaction with specific gene promoters.
  • - The study also revealed that JrWRKY4 forms a protein complex with JrVQ4 and interacts with the MYB transcription factor JrPHL8, together regulating walnut resistance, offering valuable insights for future molecular breeding efforts.
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  • Walnut anthracnose, caused by Colletotrichum gloeosporioides, poses a significant threat to walnut production, making it essential to understand the interaction between the pathogen and the walnut host.
  • A study used dual transcriptomic analysis to explore how anthracnose-resistant (F26) and susceptible (F423) walnut fruit respond to the pathogen over three time points, revealing distinct gene expression patterns and responses between the two.
  • Findings suggest that F26 has a broader response to the pathogen and identifies key effector proteins from C. gloeosporioides, contributing valuable insights for developing prevention strategies against walnut anthracnose.
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Vaccination is the most effective method for preventing infectious diseases. Oral vaccinations have attracted much attention due to the ability to boost intestinal and systemic immunity. The focus of this study was to develop a poly (lactide-co-glycolide) acid (PLGA)-based ternary polyelectrolyte complex (PEC) with chitosan, sodium alginate, and transmembrane peptides R8 for the delivery of antigen proteins.

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I-III-VI quantum dots (QDs) have gained widespread attention owing to their significant advantages of non-toxicity, large structural tolerance, and efficient photoluminescence potential. However, the disbalance of reactivity between the elements will result in undesired products and compromised optical properties. Reducing the activity of highly reactive group IB elements is the most common approach, but it will reduce the overall reactivity and lead to a wide dispersion of QD sizes.

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A novel insertion device is introduced, designated as the Mango wiggler, designed for synchrotron radiation (SR) imaging that provides a large field of view. This innovative device is constructed from two orthogonal planar wigglers with a small difference in their period lengths, eliciting the phase difference of the magnetic fields to incrementally transitions from 0 to π/2. Such a configuration enlarges the vertical divergence of the light source, as with the horizontal divergence.

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Selenium nanoparticles (SeNPs) enhance the immune response as adjuvants, increasing the efficacy of viral vaccines, including those for COVID-19. However, the efficiency of mucosal SeNPs in boosting vaccine-induced protective immunity against tuberculosis remains unclear. Therefore, this study aims to investigate whether the combination of SeNPs with the AH antigen (Ag85A-HspX) can boost respiratory mucosal immunity and thereby enhance the protective effects against tuberculosis.

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Hypoxia-inducible factor-1α (HIF-1α) is a pivotal regulator of metabolic and inflammatory responses. This study investigated the role of HIF-1α in Mycobacterium bovis infection and its effects on host immune metabolism and tissue damage. We evaluated the expression of immunometabolism markers and matrix metalloproteinases (MMPs) in cells infected with M.

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  • Riboswitches are important RNA elements involved in regulating metabolic pathways, and a new type called the THF-II riboswitch has been found near folE genes that specifically detects tetrahydrofolate (THF).
  • Using techniques like structural analysis and isothermal titration calorimetry, researchers investigated how the THF-II riboswitch recognizes its ligand and functionally interacts with other compounds.
  • This research reveals critical interactions within the riboswitch and identifies potential drug candidates, which could lead to new therapeutic options by targeting riboswitches or exploring THF analogs.
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X-ray scattering/diffraction tensor tomography techniques are promising methods to acquire the 3D texture information of heterogeneous biological tissues at micrometre resolution. However, the methods suffer from a long overall acquisition time due to multi-dimensional scanning across real and reciprocal space. Here, a new approach is introduced to obtain 3D reciprocal information of each illuminated scanning volume using mathematic modeling, which is equivalent to a physical scanning procedure for collecting the full reciprocal information required for voxel reconstruction.

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Given the worldwide problem posed by enteric pathogens, the discovery of safe and efficient intestinal adjuvants combined with novel antigen delivery techniques is essential to the design of mucosal vaccines. In this work, we designed poly (lactic-co-glycolic acid) (PLGA)-based nanoparticles (NPs) to codeliver all-trans retinoic acid (atRA), novel antigens, and CpG. To address the insolubility of the intestinal adjuvant atRA, we utilized PLGA to encapsulate atRA and form a "nanocapsid" with polydopamine.

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Irregular coal pillars inevitably appear in the layout of the current long-wall mining method, which easily forms stress concentrations and becomes a heavy disaster area of rock burst. In order to solve the impact risk of irregular coal pillar working face, it is necessary to study the instability mechanism of the coal pillar and put forward effective prevention and control measures. Based on the research background of 14320 working face of the Dongtan Coal Mine in the Yanzhou mining area of China, this paper studies the prediction and prevention of rock bursts in this kind of coal pillar by means of theoretical calculation, numerical simulation, engineering analogy, and field monitoring.

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Synchrotron tomography experiments are transitioning into multifunctional, cross-scale, and dynamic characterizations, enabled by new-generation synchrotron light sources and fast developments in beamline instrumentation. However, with the spatial and temporal resolving power entering a new era, this transition generates vast amounts of data, which imposes a significant burden on the data processing end. Today, as a highly accurate and efficient data processing method, deep learning shows great potential to address the big data challenge being encountered at future synchrotron beamlines.

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With pre-trained large models and their associated fine-tuning paradigms being constantly applied in deep learning, the performance of large models achieves a dramatic boost, mostly owing to the improvements on both data quantity and quality. Next-generation synchrotron light sources offer ultra-bright and highly coherent X-rays, which are becoming one of the largest data sources for scientific experiments. As one of the most data-intensive scanning-based imaging methodologies, ptychography produces an immense amount of data, making the adoption of large deep learning models possible.

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Tomography experiments generate three-dimensional (3D) reconstructed slices from a series of two-dimensional (2D) projection images. However, the mechanical system generates joint offsets that result in unaligned 2D projections. This misalignment affects the reconstructed images and reduces their actual spatial resolution.

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Article Synopsis
  • Walnut anthracnose is a significant disease that hinders walnut industry growth in China, and the role of long non-coding RNAs (lncRNAs) in disease resistance is not fully understood.
  • A study identified lncRNA109897, which enhances the expression of JrTLP1b through JrCCR4, highlighting a transcriptional cascade critical for resistance against the disease.
  • The research demonstrates that the interaction between lncRNA109897, JrCCR4, and JrTLP1b enhances walnut resistance to anthracnose, providing valuable insights into disease management strategies.
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Sliding clamp is a highly conserved protein in the evolution of prokaryotic and eukaryotic cells. The sliding clamp is required for genomic replication as a critical co-factor of DNA polymerases. However, the sliding clamp analogs in viruses remain largely unknown.

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High-data-throughput and multimodal-acquisition experiments will prevail in next-generation synchrotron beamlines. Orchestrating dataflow pipelines connecting the data acquisition, processing, visualization and storage ends are becoming increasingly complex and essential for enhancing beamline performance. Mamba Data Worker (MDW) has been developed to address the data challenges for the forthcoming High Energy Photon Source (HEPS).

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