Publications by authors named "Yueyuxiao Yang"

Article Synopsis
  • - RNA velocity is a valuable tool for understanding how cells respond and change over time, but existing methods have limitations due to their assumptions.
  • - The study presents SymVelo, a new framework that combines both high- and low-dimensional data to analyze cellular processes more effectively.
  • - SymVelo has been shown to successfully track cell differentiation, study gene responses, and analyze transcription dynamics, while also being flexible enough for future research applications.
View Article and Find Full Text PDF

Metrology is the science of measurement and its applications, whereas biometrology is the science of biological measurement and its applications. Biometrology aims to achieve accuracy and consistency of biological measurements by focusing on the development of metrological traceability, biological reference measurement procedures, and reference materials. Irreproducibility of biological and multi-omics research results from different laboratories, platforms, and analysis methods is hampering the translation of research into clinical uses and can often be attributed to the lack of biologists' attention to the general principles of metrology.

View Article and Find Full Text PDF

Promoter-proximal pausing of RNA polymerase II is a key process regulating gene expression. In latent HIV-1 cells, it prevents viral transcription and is essential for latency maintenance, while in acutely infected cells the viral factor Tat releases paused polymerase to induce viral expression. Pausing is fundamental for HIV-1, but how it contributes to bursting and stochastic viral reactivation is unclear.

View Article and Find Full Text PDF