Publications by authors named "Yuewen Deng"

Ocean acidity extreme (OAX) events, triggered by climate change and anthropogenic activities, are projected to become more intense and frequent in coastal ecosystems, devastating marine bivalves and ecosystems they support. Maternal effects adaptively modulate offspring performance in response to climatic stressors, but whether and to what extent they can confer offspring resistance to OAX remain largely unknown. Here, we investigated impacts of OAX on the parental and larval lipidomes of Manila clams (Ruditapes philippinarum) to add further insights into the energetic nature of maternal effects.

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Pinctada fucata martensii is an economically important bivalve mollusk, as this species makes a major contribution to seawater pearl production. Pearl production efficiency varies between the sexes of P. f.

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Marine heatwaves (MHWs) have become more frequent, intense and extreme in oceanic systems in the past decade, resulting in mass mortality events of marine invertebrates and devastating coastal marine ecosystems. While metabolic homeostasis is a fundamental requirement in stress tolerance, little is known about its role under intensifying MHWs conditions. Here, we investigated impacts of MHWs on the metabolism in pearl oysters (Pinctada maxima) - an ecologically and economically significant bivalve species in tropical ecosystems.

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microRNAs are a class of non-coding RNAs with post-transcriptional regulatory functions in eukaryotes. In our previous study, miR-184-3p was identified in the hemocyte transcriptome of Pinctada fucata martensii (Pm-miR-184-3p), and its expression was shown to be up-regulated following transplantation surgery; however, its role in regulating transplantation immunity has not yet been clarified. Here, the role of Pm-miR-184-3p in regulating the immune response of P.

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Ocean acidity extremes (OAX) events are becoming more frequent and intense in coastal areas in the context of climate change, generating widespread consequences on marine calcifying organisms and ecosystems they support. While transgenerational exposure to end-of-century scenario of ocean acidification (i.e.

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Article Synopsis
  • * The research found that as microplastics are exposed to seawater longer, the variety and number of bacteria on them increase, indicating that these tiny pollutants create specific habitats for microbes.
  • * A significant finding was the presence of harmful bacteria, such as Vibrio, on microplastic surfaces, suggesting that they could spread diseases and highlighting the need for urgent action against the risks linked to microplastics in the ocean.
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With the advancement of nanotechnology and the growing utilization of nanomaterials, titanium dioxide (TiO) has been released into aquatic environments, posing potential ecotoxicological risks to aquatic organisms. In this study, the toxicological effects of TiO nanoparticles were investigated on the intestinal health of pearl oyster (Pinctada fucata martensii). The pearl oysters were subjected to a 14-day exposure to 5-mg/L TiO nanoparticle, followed by a 7-day recovery period.

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To evaluate the physiological responses to titanium dioxide nanoparticles exposure in pearl oysters (Pinctada fucata martensii), pearl oysters were exposed for 14 days to different levels (0.05, 0.5, and 5 mg/L) of nano-TiO suspensions, while a control group did not undergo any nano-TiO treatment.

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Article Synopsis
  • Color polymorphisms in molluscan shells impact aquaculture, with variations in shell color linked to growth rates and pearl coloration in pearl oysters.
  • This study identified crucial carotenoid pigments, specifically capsanthin and xanthophyll, in the mantles of gold- and silver-lipped pearl oysters and revealed the genes involved in color formation.
  • Exosome analysis led to the identification of 1223 proteins, including 126 differentially expressed proteins related to carotenoid and iron metabolism, enhancing our understanding of the nacre color formation process in pearls.
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Introduction: In the pearl culture industry, a major challenge is the overactive immunological response in pearl oysters resulting from allotransplantation, leading to shell-bead rejection and death. To better understand the molecular mechanisms of postoperative recovery and the regulatory role of DNA methylation in gene expression, we analyzed the changes in DNA methylation levels after allotransplantation in pearl oyster , and elucidated the regulatory function of DNA methylation in promoter activity of () gene.

Methods: We constructed nine DNA methylomes at different time points after allotransplantation and used bisulfite genomic sequencing PCR technology (BSP) to verify the methylation status in the promoter of .

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Novel microRNA miR-63 (novel-miR-63) from pearl oyster Pinctada fucata martensii (Pm-novel-miR-63) is a species-specific miRNA. Our previous research has shown that the expression of Pm-novel-miR-63 was significantly downregulated at 24 h after nucleus transplantation. In this study, we analyzed the function and regulatory role of Pm-novel-miR-63 in the immune response of pearl oysters.

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The frequency at which organisms are exposed to hypoxic conditions in aquatic environments is increasing due to coastal eutrophication and global warming. To reveal the effects of long-term hypoxic stress on metabolic changes of pearl oyster, commonly known as Pinctada (Pinctada fucata martensii), the present study performed the integrated analysis of transcriptomics and metabolomics to investigate the global changes of genes and metabolites following 25 days hypoxia challenge. Transcriptome analysis detected 1108 differentially expressed genes (DEGs) between the control group and the hypoxia group.

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For marine animals living in estuarine, coastal, and intertidal areas, salinity changes and periodic hypoxia are typical stressors; however, how the varying salinity and dissolved oxygen affect the quality and nutrition of marine aquaculture species, such as oysters remains unknown. In this study, we evaluated the diel-cycling hypoxia under different salinities on fatty acid composition and lipid metabolism in oyster Crassostrea hongkongensis digestive glands. After 28 days of exposure, both hypoxia and elevated salinity caused a decrease in the saturated fatty acid (SFA)/polyunsaturated fatty acid (PUFA) ratio of C.

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Article Synopsis
  • The Hong Kong oyster, Crassostrea hongkongensis, faces threats from increased salinity levels in estuaries, affecting its farming viability in South China.
  • A whole-transcriptome analysis revealed thousands of differentially expressed RNAs related to salinity stress, with important roles in amino acid metabolism and immune defense identified through GO and KEGG analyses.
  • The study constructed a circRNA-associated competing endogenous RNA network, emphasizing the significance of taurine and phenylalanine metabolism, which ultimately helps in understanding and improving the salinity tolerance of these bivalves.
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A large number of aquaculture facilities produced during the farming process are made of plastics. These plastics can be a distinct habitat for bacteria due to their unique materials. Therefore, this paper focuses on plastic aquaculture facilities and investigates the impact of bacterial accumulation on plastic surfaces.

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Anthropologic activities caused frequent eutrophication in coastal and estuarine waters, resulting in diel-cycling hypoxia. Given global climate change, extreme weather events often occur, thus salinity fluctuation frequently breaks out in these waters. This study aimed to evaluate the combined effects of salinity and hypoxia on intestinal microbiota and digestive enzymes of Crassostrea hongkongensis.

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Sipuncula is a class of exocoelomic unsegmented animals whose evolutionary relationships are unresolved. The peanut worm Sipunculus nudus is a globally distributed, economically important species belonging to the class Sipuncula. Herein, we present the first high-quality chromosome-level assembly of S.

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Effective immune regulation after transplantation during pearl production is crucial for the cultivation of high-quality pearls. MicroRNAs (miRNAs) play an important role in a variety of physiological processes. To understand the regulatory rules of miRNAs after transplantation in Pinctada funcata martensii, we constructed 13 miRNA transcriptomes, including the control group (Con), allograft (Al), and xenograft (Xe) transplantation at six time points (6, 12, and 24 h and 3, 6, and 12 days), in which the xenografted mantle tissue was from Pinctada maxima.

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The South American mussel, Mytella strigata, is a highly invasive fouling species of great concern along intertidal shores in East and Southeast Asia, posing serious threats to native biodiversity and ecosystems. Intertidal areas, being increasingly attacked by heatwaves over the last decade, are among the most thermally challenging habitats, yet the fate of this highly invasive mussel under scenarios of hotter heatwaves remains unknown. Here, we investigated how M.

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Histone acetylation is a dynamic epigenetic modification and sensitive to the changes in extracellular environment. Butyrate, a histone deacetylase inhibitor, can inhibit the deacetylation process of histones. In this study, we found that the acetylation level of H3 was enhanced at 12 h after lipopolysaccharide (LPS) stimulation and increased at 6 h after combining treatment with LPS and butyrate in pearl oyster Pinctada fucata martensii.

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Analyses of the transcriptome and metabolome were conducted to clarify alterations of key genes and metabolites in pearl oysters following exposure to short-term hypoxic treatment. We totally detected 209 DEGs between the control and hypoxia groups. Enrichment analysis indicated the enrichment of GO terms including "oxidation-reduction process", "ECM organization", "chaperone cofactor-dependent protein refolding", and "ECM-receptor interaction" KEGG pathway by the DEGs.

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Marine heatwaves (MHWs) are projected to increase in their frequency, intensity, and duration, causing irreversible and catastrophic consequences for intertidal ecosystems around the world. The highly invasive fouling mussel, Arcuatula senhousia, can cause marked habitat alteration by constructing extremely intense byssal mats, devastating the biodiversity of many intertidal systems, yet very little is known about its fate under conditions of more frequent, hotter and longer MHWs. Here, we assessed impacts of two scenarios of MHWs (low-intensity with 4 °C rise of seawater temperature and high-intensity with 8 °C rise, respectively) on the byssal production of A.

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Article Synopsis
  • - This study explored how biomineralization influences the development of shells and other exoskeletons, particularly in mollusks like the pearl oyster *Pinctada fucata marntensii*, to understand growth and size diversity.
  • - Researchers conducted whole-genome resequencing on 878 wild and breeding pearl oysters to map the genetic factors behind controlled growth and ectopic biomineralization, revealing key interactions between insulin-like growth factor and transcription factors.
  • - The study also highlighted the role of long noncoding RNAs and hormones in regulating shell growth, suggesting that similar genetic mechanisms might exist across various species including bivalves and mammals.
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Marine heatwaves (MHWs) have increased in intensity and frequency in global oceans, causing deleterious effects on many marine organisms and ecosystems they support. Bivalves are among the most vulnerable taxonomic groups to intensifying MHWs, yet little is known about the underlying mechanisms. Here, we investigated the impact of MHWs on the digestive metabolism of pearl oysters (Pinctada maxima).

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Bivalves have evolved effective strategies to combat different pathogens in the environment. They rely on innate immunity to deal with the invasion of various bacteria, viruses, and other microorganisms. However, the molecular mechanisms underlying the responses remain largely unknown.

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