Planted Citrus Regulates the Community and Networks of -Harboring Bacteria to Drive Phosphorus Availability Between Karst and Non-Karst Soils.

The phosphorus (P) availability in soils is influenced by microbes, particularly those containing the gene responsible for phosphate solubilization. The present study investigated the community structure, diversity, and co-occurrence networks of -harboring bacteria in karst and non-karst citrus orchard soils across a planting duration gradient, natural forests, and abandoned land, as well as the soil total P (TP) and available P (AP) contents and enzyme activities. The soil AP contents were lower in the karst regions than in the non-karst regions, while the soil organic carbon (C; SOC), exchangeable calcium, and microbial biomass nitrogen (N) contents; alkaline phosphatase (ALP) and β-Glucuronidase activities; and pH had the opposite trends.

Effects of storage durations on flavour and bacterial communities in Liupao tea.

Long-term storage of Liupao tea is conducive to improving its flavour and commercial value. Although bacterial communities influence Liupao tea flavour, their impact during storage remains unclear. The aroma compounds and bacterial communities were determined by headspace solid-phase microextraction coupled with gas chromatography-mass spectrometry (HS-SPME-GC-MS) and Illumina Nova6000 analysis.

Root and mycorrhizal nutrient acquisition strategies in the succession of subtropical forests under N and P limitation.

Background: Nutrient limitation is a universal phenomenon in terrestrial ecosystems. Root and mycorrhizal are critical to plant nutrient absorption in nutrient-limited ecosystems. However, how they are modified by N and P limitations with advancing vegetation successions in karst forests remains poorly understood.

Lithology and elevated temperature impact phoD-harboring bacteria on soil available P enhancing in subtropical forests.

Plants are generally limited by soil phosphorus (P) deficiency in forest ecosystems. Soil available P is influenced by lithology, temperature, and soil microbes. However, the interactive effects of these factors on soil P availability in subtropical forests remain unclear.

Quantitative proteomics revealed protein biomarkers to distinguish malignant pleural effusion from benign pleural effusion.

To identify protein biomarkers capable of early prediction regarding the distinguishing malignant pleural effusion (MPE) from benign pleural effusion (BPE) in patients with lung disease. A four-dimensional data independent acquisition (4D-DIA) proteomic was performed to determine the differentially expressed proteins in samples from 20 lung adenocarcinoma MPE and 30 BPE. The significantly differential expressed proteins were selected for Gene Ontology (GO) enrichment and Kyoto Encyclopaedia of Genes and Genomes (KEGG) pathway analysis.

Integrative analyses identify opportunistic pathogens of patients with lower respiratory tract infections based on metagenomic next-generation sequencing.

Lower respiratory tract infections (LRTIs) represent some of the most globally prevalent and detrimental diseases. Metagenomic next-generation sequencing (mNGS) technology has effectively addressed the requirement for the diagnosis of clinical infectious diseases. This study aimed at identifying and classifying opportunistic pathogens from the respiratory tract-colonizing microflora in LRTI patients using data acquired from mNGS analyses.

Vegetation recovery reshapes the composition and enhances the network connectivity of phoD-harboring microorganisms to promote P availability in a karst ecosystem.

Soil phoD-harboring microorganisms can facilitate phosphorus (P) transformation and increase the available P (AP) in P-limited soils; however, the mechanism by which these microorganisms enhance AP throughout the vegetation recovery process of karst ecosystems is poorly understood. Accordingly, this study investigates the effect of vegetation recovery on soil AP and the community composition and network connectivity of phoD-harboring microorganisms to elucidate the mechanism by which phoD-harboring microorganisms enhance soil AP in the four vegetation recovery stages (i.e.

Water quality and microecosystem of water tanks in karst mountainous area, Southwest China.

Karst mountainous areas in Southwest China, the world's largest bare karst area, are faced with growing water shortages. Rainwater harvesting plays an important role in alleviating water shortage. However, there remains a substantial gap in the research regarding the water quality of tanks.

Soil bacterial community changes along elevation gradients in karst graben basin of Yunnan-Kweichow Plateau.

Elevation gradients could provide natural experiments to examine geomorphological influences on biota ecology and evolution, however little is known about microbial community structures with soil depths along altitudinal gradients in karst graben basin of Yunnan-Kweichow Plateau. Here, bulk soil in A layer (0 ~ 10 cm) and B layer (10 ~ 20 cm) from two transect Mounts were analyzed by using high-throughput sequencing coupled with physicochemical analysis. It was found that the top five phyla in A layer were Proteobacteria, Acidobacteria, Actinobacteria, Bacteroidetes, and Verrucomicrobia, and the top five phyla in B layer were Proteobacteria, Acidobacteria, Actinobacteria, Verrucomicrobia, and Chloroflexi in a near-neutral environment.

Clinical diagnosis and etiology of patients with pneumonia based on metagenomic next-generation sequencing.

The incidence of severe () pneumonia and coinfections is increasing. Early detection of this condition is needed to prevent negative outcomes, along with detailed descriptions of its associated clinical characteristics. Our study contributes by undertaking etiological analysis of patients with .

Accumulation in nutrient acquisition strategies of arbuscular mycorrhizal fungi and plant roots in poor and heterogeneous soils of karst shrub ecosystems.

Background: Arbuscular mycorrhizal (AM) fungi and roots play important roles in plant nutrient acquisition, especially in nutrient poor and heterogeneous soils. However, whether an accumulation strategy of AM fungi and root exists in such soils of karst shrubland ecosystems remains unclear. Root traits related to nutrient acquisition (root biomass, AM colonisation, root acid phosphatase activity and N fixation) were measured in two N-fixing plants (i.

Long-term forest restoration influences succession patterns of soil bacterial communities.

Microorganisms have a major influence on soil biogeochemical processes and vegetation establishment. However, their long-term succession patterns and short-term turnover are not well-understood in artificial forest ecosystems. The aim of the present study was to investigate the effects of stand ages and seasons on soil bacterial community in a chronosequence of Chinese Pinus massoniana plantations, in 3, 19, and 58-year-old plots.

Alkaline Phosphomonoesterase-Harboring Microorganisms Mediate Soil Phosphorus Transformation With Stand Age in Chinese Plantations.

-harboring microorganisms facilitate mineralization of organic phosphorus (P), while their role in the regulation of soil P turnover under P-limited conditions in plantations is poorly understood. The aim of the present study was to investigate the effects of stand age and season on soil P fractions and -harboring microorganism communities in a chronosequence of Chinese plantations including 3, 19, and 58 years. The soil P fractions (i.

Spatial and temporal dynamics of bacterioplankton community composition in a subtropical dammed karst river of southwestern China.

River damming influences the hydro-physicochemical variations in karst water; however, such disruption in bacterioplankton communities has seldom been studied. Here, three sampling sites (city-river section, reservoir area, and outflow area) of the Ca -Mg -HCO -SO water type in the dammed Liu River were selected to investigate the bacterioplankton community composition as identified by high-throughput 16S rRNA gene sequencing. In the dammed Liu River, thermal regimes have been altered, which has resulted in considerable spatial-temporal differences in total dissolved solids (TDSs), oxidation-reduction potential (Eh), dissolved oxygen (DO), and pH and in a different microenvironment for bacterioplankton.

[Structure Analysis of Arbuscular Mycorrhizal in Roots from Different Shrubs in Karst Regions].

To explore if there are species-preferential characteristics of arbuscular mycorrhizal (AM) and host plants in karst regions, 13 shrub plants (including leguminosae and non-leguminosae) were selected to study the AM community structure of root samples. The soil nutrients in rhizosphere soils significantly differ among shrubs; they are higher in leguminosae than in non-leguminosae. Cluster analysis shows that all 13 shrubs can be infected by AM.

[Relationship Between the Bacterial Abundance and Production with Environmental Factors in a Subtropical Karst Reservoir].

In recent years, the increasing scarcity of water resources and eutrophication of water have become more serious. Reservoirs that are far from big cities have become important sources of drinking water and were targets of research and protection. Therefore, the abundance and production of bacteria and their correlations with environmental factors were investigated in the Dalongdong Reservoir, Shanglin County, Guangxi Province, using Quantitative Real-time PCR technology and the C tracer technique.

Influence of Altered Microbes on Soil Organic Carbon Availability in Karst Agricultural Soils Contaminated by Pb-Zn Tailings.

Soil organic carbon (SOC) availability is determined via a complex bio-mediated process, and Pb-Zn tailings are toxic to the soil microbes that are involved in this process. Here, Pb-Zn-tailings- contaminated karst soils with different levels (paddy field > corn field > citrus field > control group) were collected to explore the intrinsic relationship between Pb-Zn tailings and microbes due to the limited microbial abundance in these soils. The SOC concentration in the paddy fields is the highest.

[Carbon Metabolism Characteristics of the Karst Soil Microbial Community for Pb-Zn Mine Tailings].

BIOLOG and 18S rRNA PCR-DGGE methods were used to estimate the characteristics of carbon source metabolism of the soil microbial community as well as the relationship between soil fungi and soil organic carbon in different karst land use types (corn field, citrus field, and paddy field) contaminated by Pb-Zn tailings at Sidi Village, Yangshuo, Guangxi Zhuang Autonomous Region, SW China. It was found that the concentrations of Pb, Zn, Cu, and Cd were highest in the paddy field, followed by the corn field, citrus field, and control group (dry field). In addition, the geo-accumulation index indicated that the heavy metal pollution at this area was caused by Pb and Cd and that Cd was the key environmental risk factor.

[Various effects on the Abundance and Composition of Arbuscular Mycorrhizal Fungal Communities in Soils in Karst Shrub Ecosystems].

Slope position is a key factor used in the restoration of vegetation in degraded karst ecosystems, and arbuscular mycorrhizal fungi (AMF) play an important role in improving this plant growth. However, little information is available regarding the effects of slope position on arbuscular mycorrhizal fungi. To test whether these fungal communities are impacted by slope position, the abundance, and composition of soil, AMF communities along the slope position were analyzed through terminal restriction fragment length polymorphism (T-RFLP) and real-time fluorescence-based quantitative polymerase chain reaction (real-time PCR).

Increased associated effects of topography and litter and soil nutrients on soil enzyme activities and microbial biomass along vegetation successions in karst ecosystem, southwestern China.

Studying the influence of topography and litter and soil nutrients on soil enzymes and microbial biomass is important to the understanding of soil nutrient transformation and cycling, but these relationships in heterogeneous soils of karst ecosystem remains poorly understood. We determined environment factors influencing the urease (URS) and alkaline phosphatase (ALP) activity and microbial biomass C and N (MBC and MBN) with advancing vegetation succession. The results showed that ALP increased but URS decreased with the advancing vegetation succession.

[Effects of Lithology on the Abundance and Composition of Soil Nitrogen-fixing Bacteria and Arbuscular Mycorrhizal Fungal Communities in Karst Shrub Ecosystem].

Lithology is a key factor when used to restore vegetation in karst degraded ecosystems, and arbuscular mycorrhizal (AM) fungi and nitrogen-fixing bacteria play an important role in improving plant growth. However, little information is available regarding the effects of lithology on these two groups of microorganisms. To test whether these microbial communities are impacted by lithology, the abundance and composition of soil AM fungal and nitrogen-fixing bacteria communities were determined through terminal restriction fragment length polymorphism (T-RFLP) and real-time fluorescence-based quantitative PCR (real-time PCR).

[Effects of Bisphenol A on Characteristics of Paddy Soil Microbial Community Under Different Cultural Conditions].

Bisphenol A (BPA) is widely known as a typical synthetic environmental hormone. Effects of BPA concentrations and aerations on soil microbial communities were rarely reported. This paper presented the studies on effects of various concentrations of BPA (0, 0.

Effect of vegetation types on soil arbuscular mycorrhizal fungi and nitrogen-fixing bacterial communities in a karst region.

Arbuscular mycorrhizal (AM) fungi and nitrogen-fixing bacteria play important roles in plant growth and recovery in degraded ecosystems. The desertification in karst regions has become more severe in recent decades. Evaluation of the fungal and bacterial diversity of such regions during vegetation restoration is required for effective protection and restoration in these regions.

Enhanced Nitrogen Availability in Karst Ecosystems by Oxalic Acid Release in the Rhizosphere.

In karst ecosystems, a high level of CaCO3 enhances the stabilization of soil organic matter (SOM) and causes nitrogen (N) and/or phosphorus (P) limitation in plants. Oxalic acid has been suggested to be involved in the nutrient-acquisition strategy of plants because its addition can temporarily relieve nutrient limitation. Therefore, understanding how oxalic acid drives N availability may help support successful vegetation restoration in the karst ecosystems of southwest China.

Community structure analysis of soil ammonia oxidizers during vegetation restoration in southwest China.

Soil ammonia oxidizers play a critical role in nitrogen cycling and ecological restoration. The composition and structure of soil ammonia oxidizers and their impacting factors were studied in four typical ecosystem soils, tussock (T), shrub (S), secondary forest (SF), and primary forest (PF), during vegetation restoration in the Karst region of Southwest China. The composition and structure of the ammonia-oxidizing bacteria (AOB) and ammonia-oxidizing archaea (AOA) communities were characterized by sequencing the amoA and arch-amoA genes, respectively.