Publications by authors named "Yu Peng Wu"

Objective: To identify neutrophil extracellular traps (NETs)-related molecular clusters and establish a novel gene signature for predicting biochemical recurrence in prostate cancer (PCa).

Methods: The transcriptome and clinicaldata of PCa sampleswere obtained from The TCGA and GEO databases. To identify NET-related molecular clusters, consensus clustering analyses were performed.

View Article and Find Full Text PDF

Background: Diffusion tensor imaging (DTI) is susceptible to partial volume effects from free water, which can be corrected by using bi-tensor free water imaging (FWI). This approach may improve the evaluation of microstructural changes associated with Wilson's disease (WD).

Purpose: To investigate microstructural changes in white matter of WD using DTI and FWI.

View Article and Find Full Text PDF

Background And Purpose: Previous studies have reported metal accumulation and microstructure changes in deep gray nuclei (DGN) in Wilson disease (WD). However, there are limited studies that investigate whether there is metal accumulation and microstructure changes in DGN of patients with WD with normal-appearing routine MRI. This study aimed to evaluate multiparametric changes in DGN of WD and whether the findings correlate with clinical severity in patients with WD.

View Article and Find Full Text PDF

Introduction: This study aims to explore the role of cuproptosis-related genes in ACC, utilizing data from TCGA and GEO repositories, and to develop a predictive model for patient stratification.

Methods: A cohort of 123 ACC patients with survival data was analyzed. RNA-seq data of 17 CRGs were examined, and univariate Cox regression identified prognostic CRGs.

View Article and Find Full Text PDF

Objective: Polychlorinated biphenyls (PCBs) have caused great environmental concerns. The study aims to investigate underlying molecular mechanisms between PCBs exposure and prostate cancer (PCa).

Methods: To investigate the association between PCBs exposure and prostate cancer by using CTD, TCGA, and GEO datasets.

View Article and Find Full Text PDF

Bladder cancer represents a significant public health concern with diverse genetic alterations influencing disease onset, progression, and therapy response. In this study, we explore the multifaceted role of Solute Carrier Family 31 Member 1 (SLC31A1) in bladder cancer, a pivotal gene involved in copper homeostasis. Our research involved analyzing the SLC31A1 gene expression via RT-qPCR, promoter methylation via targeted bisulfite sequencing, and mutational status via Next Generation Sequencing (NGS) using the clinical samples sourced by the local bladder cancer patients.

View Article and Find Full Text PDF
Article Synopsis
  • ND630 is a new drug that targets the expression of ACACA and is thought to affect lipid metabolism, particularly in prostate cancer, but its specific effects are still not well understood.
  • The study investigates circKIF18B_003, a circular RNA derived from the oncogene KIF18B, which is overexpressed in prostate cancer and potentially promotes cancer progression.
  • Results showed that higher levels of circKIF18B_003 are linked to worse patient outcomes, increasing cancer cell growth and spread, and it was found to interact with miR-370-3p, suggesting a complex regulatory mechanism in cancer development.
View Article and Find Full Text PDF

Purpose: To investigate the risk factors for postoperative lymphorrhea or/and lymphocele (PLL) in patients undergoing radical prostatectomy (RP).

Materials And Methods: The clinical data of 606 patients were retrospectively collected. The receiver operating characteristic (ROC) curve was utilized to identify the optimal cutoff value.

View Article and Find Full Text PDF
Article Synopsis
  • Bi-tensor free water imaging offers improved detection of microstructural brain changes compared to traditional single tensor diffusion tensor imaging, specifically in Wilson's disease (WD).
  • A study involving 29 WD patients and 25 control subjects found significant increases in free water and fractional anisotropy (FA) in various deep gray matter (DGM) nuclei of WD patients, even those with normal MRI results.
  • The results showed that free water and FA values were positively correlated with neurological impairment as measured by the Unified Wilson's Disease Rating Scale, linking specific brain alterations to clinical symptoms like tremors and dystonia.
View Article and Find Full Text PDF

Objective: The aim of this study was to evaluate the sonographic features and to compare the sonographic findings with the pathologic features.

Methods: The sonographic and pathological features of all patients were retrospectively reviewed.

Results: All these 9 patients presented with a palpable breast mass first found by the patient before presentation.

View Article and Find Full Text PDF

The complete mitochondrial genome (mitogenome) of (Lepidoptera: Geometridae) is 15,538 bp in length, containing 13 PCGs, 22 tRNAs, two rRNAs, and an A + T-rich region. All PCGs initiate with typical start codon of ATN and share the complete stop codon of TAA, whereas starts with CGA. The ML analysis was performed using a dataset matrix containing 13 PCGs concatenated from the mitogenomes of Geometridae species.

View Article and Find Full Text PDF

Expression of kinesin family member 18B (KIF18B), an ATPase with key roles in cell division, is deregulated in many cancers, but its involvement in prostate cancer (PCa) is unclear. Here, we investigated the expression and function of KIF18B in human PCa specimens and cell lines using bioinformatics analyses, immunohistochemical and immunofluorescence microscopy, and RT-qPCR and western blot analyses. KIF18B was overexpressed in PCa specimens compared with paracancerous tissues and was associated with poorer disease-free survival.

View Article and Find Full Text PDF

Background: Clear cell renal cell carcinoma (ccRCC) is one of the most frequent malignancies; however, the present prognostic factors was deficient. This study aims to explore whether there is a relationship between tumor volume (TV) and oncological outcomes for localized ccRCC.

Methods: Seven hundred forty-nine localized ccRCC patients underwent surgery in our hospital.

View Article and Find Full Text PDF
Article Synopsis
  • The study investigates the diverse cell populations in castration-resistant prostate cancer (CRPC) and their potential roles in treatment resistance and relapse.
  • It utilized single-cell RNA sequencing data to identify new marker genes and cell subtypes, revealing 1500 genes with significant variance, and classifying CRPC cells into two distinct clusters based on principal component and TSNE analyses.
  • The analyses indicated that the identified marker genes are involved in crucial biological processes and metabolic pathways, which could be significant for understanding the progression of CRPC.
View Article and Find Full Text PDF

The belongs to Erebidae in Lepidoptera. The complete mitogenome of was described in this study, which is typically circular duplex molecules and 15,344 bp in length, containing the standard metazoan set of 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and an A + T-rich region. All the inferred tRNA secondary structures show the common cloverleaf pattern, with the exception of tRNA-Ser(AGN) which lacks the DHU arm.

View Article and Find Full Text PDF

The belongs to Pyralidae in Lepidoptera. The complete mitogenome of was described in this study, which is typical circular duplex molecules and 15,430 bp in length, containing the standard metazoan set of 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and an A + T-rich region. The gene order is same with other lepidopterans.

View Article and Find Full Text PDF

The belongs to Nymphalidae in Lepidoptera. We described the complete mitogenome of , which is typical circular duplex molecules and 15,386 bp in length, containing the standard metazoan set of 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and an A + T-rich region with macro-repeat sequences. All the inferred tRNA secondary structures show the common cloverleaf pattern, with the exception of which lacks the DHU arm.

View Article and Find Full Text PDF

The belongs to Pyralidae in Lepidoptera. The complete mitogenome of was described in this study, which is typically circular duplex molecules and 15,403 bp in length, containing the standard metazoan set of 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and an A + T-rich region. The gene order is the same as other lepidopterans.

View Article and Find Full Text PDF

Purpose: To identify the relevant factors, and create and validate a predictive scoring system for the duration of laparoscopic radical prostatectomy (LRP).

Patients And Methods: We retrospectively analyzed clinicopathological data from 436 patients who underwent LRP between January 2014 and January 2019, of whom 304 cases were used as a model creation group and 132 were used as a validation group. Uni/multivariate linear regression analysis was performed to determine the predictors of the duration of the procedure and a novel scoring system was created using these predictors.

View Article and Find Full Text PDF

Objective: To explore the risk factors for postoperatively pathological lymph node metastasis in patients with clinical T2N0M0 stage prostate cancer (PCa).

Methods: We retrospectively analyzed clinicopathological data of 316 patients with clinical T2 stage PCa and preoperative negative lymph nodes [LN(-)] indicated by imaging (cT2N0M0) between January 2014 and May 2019. Multivariate logistic regression analysis was performed to determine risk factors for postoperatively pathological pLN(+) in patients with cT2N0M0 stage PCa.

View Article and Find Full Text PDF

Background: Prostate cancer (PCa) is one of the most common malignant tumors worldwide. Accumulating evidence has suggested that circular RNAs (circRNAs) are involved in the development and progression of various cancers, and they show great potential as novel biomarkers. However, the underlying mechanisms and specific functions of most circRNAs in PCa remain unknown.

View Article and Find Full Text PDF

Objective: To identify hub genes and pathways involved in castrate-resistant prostate cancer (CRPC).

Methods: The gene expression profiles of GSE70768 were downloaded from Gene Expression Omnibus (GEO) datasets. A total of 13 CRPC samples and 110 tumor samples were identified.

View Article and Find Full Text PDF

Background: Bladder cancer (BCa) is one of the important tumors that have been proven to be treatable with immunotherapy. This study aims to identify and validate a molecular prognostic index of BCa based on immunogenomic landscape analysis.

Methods: The cancer genome atlas (TCGA) database and immunology database and analysis portal (ImmPort) database were used to identified differentially expressed immune-related genes (IRGs).

View Article and Find Full Text PDF
Article Synopsis
  • * The study involved 156 testicular cancer cases and identified 1,226 differentially expressed genes, with 688 genes downregulated and 538 upregulated, showing notable involvement in immune response signaling pathways.
  • * Among the findings, specific genes (LINC01564, LINC02208, ODAM, RNA5SP111, and RNU6-196P) were linked to poor survival outcomes, while ALB and IFNG were confirmed to have different expression levels between normal and cancerous testicular tissues. *
View Article and Find Full Text PDF

Objective: Prostate cancer (PCa) is an aggressive tumor. SHC SH2-domain-binding protein 1 (SHCBP1) has been identified frequently upregulated in various cancers, in addition to PCa. The aims of this study were to determine the relationships between SHCBP1 and clinicopathological characteristics of PCa and to explore the role of SHCBP1 in PCa proliferation and progression.

View Article and Find Full Text PDF