Publications by authors named "Young Saeng Kim"

Article Synopsis
  • * Results indicate that while both methods identified diverse species within the Bacillariaceae and Naviculaceae families, microscopy showed better species-level identification than Illumina MiSeq.
  • * The research concludes that neither method is without flaws; hence, combining microscopy and metabarcoding is recommended for more accurate analysis of diatom communities.
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The prokaryotic microalga KNUA012 isolated from a freshwater bloom sample from Lake Hapcheon, Hapcheon-gun, South Korea, was investigated for its potential as a biofuel feedstock. Microalgae produce straight-chain alkanes/alkenes from acyl carrier protein-linked fatty acyls via aldehyde decarbonylase (AD; EC 1.2.

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Microbes are essential in biofloc technology for controlling nitrogen levels in water. The composition and function of microorganisms with biofloc systems were reported; however, data on microorganisms other than bacteria, such as algae (which are essential in the nitrogen cycle) and zooplankton (which are bacterial and algal predators), remain limited. The microbial communities (including bacteria, algae, zooplankton, and fungi) were investigated in shrimp farms using biofloc technology.

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Abiotic stress induces reactive oxygen species (ROS) generation in plants, and high ROS levels can cause partial or severe oxidative damage to cellular components that regulate the redox status. Here, we developed salt-tolerant transgenic rice plants that overexpressed the dehydroascorbate reductase gene () under the control of a stress-inducible sweet potato promoter (). -expressing transgenic plants exhibited improved environmental adaptability compared to wild-type plants, owing to enhanced ascorbate levels, redox homeostasis, photosynthetic ability, and membrane stability through cross-activation of ascorbate-glutathione cycle enzymes under paddy-field conditions, which enhanced various agronomic traits, including root development, panicle number, spikelet number per panicle, and total grain yield.

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Article Synopsis
  • Microalgae can utilize both organic and inorganic carbon sources, with glucose being a particularly beneficial organic carbon source that boosts biomass yield and useful substances in microalgae.
  • This study evaluated the biomass productivity and composition (lipids, proteins, pigments) of three microalgae strains (KNUA104, KNUA114, KNUA122) under photoautotrophic, mixotrophic, and heterotrophic conditions with varying glucose levels (5-25 g/L).
  • Optimal biomass yields were achieved under mixotrophic conditions with 15-20 g/L of glucose, leading to enhanced lipid and pigment production, while protein content remained relatively stable across conditions.
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The diversity indices of eukaryotic microalgal groups in the Jeonglyeongchi, Waegok, and Wangdeungjae marshes of Mount Jiri, Korea, were measured using Illumina MiSeq and culture-based analyses. Waegok marsh had the highest species richness, with a Chao1 value of 828.00, and the highest levels of species diversity, with Shannon and Simpson index values of 6.

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Article Synopsis
  • The study investigated KNUA107, a colony-forming green algae from South Korea, focusing on its potential as a bioresource and the effects of mixotrophic cultivation on biomass production.
  • Molecular analysis revealed that KNUA107 is closely related to other colony-forming green algae and showed improved growth when supplemented with glucose compared to traditional light-based (photoautotrophic) methods.
  • The findings indicate that KNUA107's enhanced biomass and lipid productivity under mixotrophic conditions highlight its promising application as a valuable bioresource.
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Bacterial and algal floc formation was induced by inoculating three species of wastewater-derived bacteria (, and ) into algal cultures (). Bacterial and algal flocs formed in algal cultures inoculated with and , and these flocs showed higher sedimentation rates than pure algal culture. The floc formed by (4988.

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Enhanced glutathione content improves lateral root development by positively regulating the transcripts of root development genes responsive to glutathione treatment, thereby increasing the overall productivity of rice plants. Glutathione is primarily known as a cellular antioxidant molecule, but its role in lateral root development in rice plants has not been elucidated. Here, we have investigated its role in lateral root development of rice Oryza sativa L.

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Article Synopsis
  • * The strains were identified and characterized using molecular techniques, and their growth was analyzed under different temperature conditions using GC/MS for fatty acid measurement.
  • * Results indicated that KNUA strains grew better at higher temperatures and contained higher levels of saturated fatty acids, highlighting their industrial potential as biological resources for feedstock.
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An excess of reactive oxygen species (ROS) can cause severe oxidative damage to cellular components in photosynthetic cells. Antioxidant systems, such as the glutathione (GSH) pools, regulate redox status in cells to guard against such damage. Dehydroascorbate reductase (DHAR, EC 1.

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Abscisic acid-, stress-, and ripening-induced () genes are involved in responding to abiotic stresses, but their precise roles in enhancing grain yield under stress conditions remain to be determined. We cloned a rice () gene, , and characterized its function in rice plants. expression was induced by abscisic acid (ABA), salt, and drought treatments.

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Ulleungdo and Dokdo are volcanic islands with an oceanic climate located off the eastern coast of South Korea. In the present study, we used barcoded Illumina MiSeq to analyze eukaryotic microalgal genera collected from Seonginbong, the highest peak on Ulleungdo, and from groundwater sites on Dongdo and Seodo Islands, which are part of Dokdo. Species richness was significantly greater in the Seonginbong samples than in the Dongdo and Seodo samples, with 834 operational taxonomic units (OTUs) identified from Seonginbong compared with 203 OTUs and 182 OTUs from Dongdo and Seodo, respectively.

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Cyanobacterial 2-Cys peroxiredoxin (thioredoxin peroxidase, ) comprises a family of thiol antioxidant enzymes critically involved in cell survival under oxidative stress. In our previous study, a putative was identified using a proteomics analysis of rice ( L. , ) seedlings exposed to oxidative stress.

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Article Synopsis
  • The study aimed to enhance the oxidative stress tolerance and biomass yield of Synechococcus elongatus PCC 7942 by introducing the dehydroascorbate reductase (DHAR) gene from Brassica juncea (BrDHAR).
  • Results showed that transgenic strains with BrDHAR exhibited a significantly improved ascorbate/dehydroascorbate (AsA/DHA) ratio, increased growth rates, higher chlorophyll content, and better pigmentation under oxidative stress conditions.
  • The findings suggest that this modified strain can better withstand environmental stress and could be potentially beneficial for producing biofuels and other bioproducts.
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Reactive oxygen species, which increase under various environmental stresses, have deleterious effects on plants. An important antioxidant, glutathione, is used to detoxify reactive oxygen species in plant cells and is mainly produced by two enzymes: gamma-glutamylcysteine synthetase (γ-ECS) and glutathione synthetase (GS). To evaluate the functional roles of the glutathione synthetase gene (OsGS) in rice, we generated four independent transgenic rice plants (TG1-TG4) that overexpressed OsGS under the control of the constitutively expressed OsCc1 promoter.

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  • The text indicates that there is a correction to an existing article identified by the DOI: 10.1371/journal.pone.0158841.
  • The nature of the correction is not specified, but it implies that there were inaccuracies or errors that needed to be addressed.
  • This correction is important for maintaining the integrity of the article and ensuring that readers have access to accurate information.
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Ascorbic acid (AsA) maintains redox homeostasis by scavenging reactive oxygen species from prokaryotes to eukaryotes, especially plants. The enzyme monodehydroascorbate reductase (MDHAR) regenerates AsA by catalysing the reduction of monodehydroascorbate, using NADH or NADPH as an electron donor. The detailed recycling mechanism of MDHAR remains unclear due to lack of structural information.

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The cyanobacterial aldehyde deformylating oxygenase (cADO) is a key enzyme that catalyzes the unusual deformylation of aliphatic aldehydes for alkane biosynthesis and can be applied to the production of biofuel in vitro and in vivo. In this study, we determined crystal structures of two ADOs from Limnothrix sp. KNUA012 (LiADO) and Oscillatoria sp.

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Dehydroascorbate reductase (DHAR) is a key enzyme involved in the recycling of ascorbate, which catalyses the glutathione (GSH)-dependent reduction of oxidized ascorbate (dehydroascorbate, DHA). As a result, DHAR regenerates a pool of reduced ascorbate and detoxifies reactive oxygen species (ROS). In previous experiments involving transgenic rice, we observed that overexpression of DHAR enhanced grain yield and biomass.

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Dehydroascorbate reductase from Oryza sativa L. japonica (OsDHAR), a key enzyme in the regeneration of vitamin C, maintains reduced pools of ascorbic acid to detoxify reactive oxygen species. In previous studies, the overexpression of OsDHAR in transgenic rice increased grain yield and biomass as well as the amount of ascorbate, suggesting that ascorbate levels are directly associated with crop production in rice.

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Fuel ethanol production is far more costly to produce than fossil fuels. There are a number of approaches to cost-effective fuel ethanol production from biomass. We characterized stress response of thermotolerant Saccharomyces cerevisiae KNU5377 during glucose-based batch fermentation at high temperature (40°C).

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