Publications by authors named "Yoon Seob Kim"

Article Synopsis
  • * The review discusses various conditions such as hidradenitis suppurativa, vitiligo, and atopic dermatitis, highlighting the diverse applications of tetracyclines in dermatology.
  • * It also examines sarecycline, a new narrow-spectrum tetracycline, emphasizing its clinical effectiveness and potential effects on the microbiome, advocating for a broader use of tetracyclines in treating skin disorders.
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  • * Findings revealed a significant increase in PsA prevalence, rising from 6.17 per 1,000 patients in 2008 to 19.03 in 2020, along with an increased incidence rate from 3.35 to 5.01 per 1,000 patient-years.
  • * Key risk factors for developing PsA include having plaque PsO, moderate-to-severe psoriasis, receiving specific treatments (oral systemic therapy or phototherapy), and having other comorbid autoimmune diseases. *
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Recent evidence suggests that physiologically normal skin harbors pervasive mutant clones with cancer drivers. Normal skin has the highest burden of somatic mutations due to persistent ultraviolet exposure throughout life. The mutation burden exponentially increases with age and is further modified by skin site, sun-damage history, and skin phototype.

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Background: Cerebrotendinous xanthomatosis (CTX, OMIM #213700) is a rare inherited metabolic disease caused by the mutation in the CYP27A1 gene. Spinal CTX is a rare clinical subgroup of CTX which lacks typical symptoms seen in classical CTX. Here we report a spinal CTX case revealed double mutation of CYP27A1 gene.

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Background: Although PD-1 blockade is effective for treating several types of cancer, the efficacy of this agent in glioblastoma is largely limited. To overcome non-responders and the immunosuppressive tumor microenvironment, combinational immunotherapeutic strategies with anti-PD-1 need to be considered. Here, we developed IL-12-secreting mesenchymal stem cells (MSC_IL-12) with glioblastoma tropism and evaluated the therapeutic effects of anti-PD-1, MSC_IL-12, and their combination against glioblastoma.

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Circular RNA (circRNA) is a non-coding RNA with a covalently closed loop structure and usually more stable than messenger RNA (mRNA). However, coding sequences (CDSs) following an internal ribosome entry site (IRES) in circRNAs can be translated, and this property has been recently utilized to produce proteins as novel therapeutic tools. However, it is difficult to produce large proteins from circRNAs because of the low circularization efficiency of lengthy RNAs.

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A 76-year-old woman with a history of diabetes mellitus presented with right-side dominant generalized chorea. At presentation, her blood glucose level was 500 mg/dL with an HbA1C of 11%. Because the patient had been on levodopa treatment from her primary physician, a dual-phase 18F-FP-CIT PET scan was performed.

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Chromosome 9 open reading frame 72 () gene pathogenic variants have been typically associated with frontotemporal dementia (FTD) and amyotrophic lateral sclerosis (ALS), but recent studies suggest their involvement in other disorders. This report describes a family with an autosomal dominant pattern of inheritance of progressive verbal auditory agnosia due to GGGGCC repeat expansion in C9orf72. A 60-year-old right-handed male truck driver presented with slowly progressive poor speech perception for 8 years, which became most troublesome when receiving verbal orders over the phone.

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The molecular mechanisms underlying melanoma metastasis remain poorly understood. In this study, we aimed to delineate the mechanisms underlying gene expression alterations during metastatic potential acquisition and characterize the metastatic subclones within primary cell lines. We performed single-cell RNA sequencing of a poorly metastatic melanoma cell line (WM239A) and its subclones with high metastatic potential to the lung (113/6-4L) and the brain (131/4-5B1 and 131/4-5B2).

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Background: Although cytoreductive surgery followed by adjuvant chemotherapy is effective as a standard treatment for early-stage ovarian cancer, the majority of ovarian cancer cases are diagnosed at the advanced stages with dissemination to the peritoneal cavity, leading to a poor prognosis. Therefore, it is crucial to understand the cellular and molecular mechanisms underlying metastasis and identify novel therapeutic targets.

Objective: In this study, we aimed to elucidate the mechanisms underlying gene expression alterations during the acquisition of metastatic potential and characterize the metastatic subpopulations within ovarian cancer cells.

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  • VCP gene mutations are linked to various conditions, including familial ALS, myopathy, frontotemporal dementia, and potentially early onset Parkinson's disease (PD).* -
  • A case study details a 53-year-old PD patient with a VCP mutation who underwent deep brain stimulation (DBS) at age 56 but developed myopathy 1.5 years post-surgery.* -
  • The study emphasizes the need for careful evaluation of DBS in VCP mutation patients due to the risk of adverse long-term effects related to the mutation's diverse symptoms.*
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  • * Whole-exome sequencing of tumors from patients with NS revealed an average of 129 somatic mutations per tumor, with common mutations found in the RAS gene and several other potential driver mutations.
  • * The findings suggest that tumors arising from NS carry significant genetic alterations that could help identify high-risk patients and support preventive surgery strategies.
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  • Normal skin contains many clones with cancer driver mutations, but its relationship to skin cancer is still not fully understood.
  • The study used whole-exome sequencing on normal skin tissues and compared them to matched blood and skin cancers, finding that exposed skin had significantly more mutations than nonexposed skin.
  • Key driver mutations were identified in genes linked to skin cancer, and although normal skin had some genetic changes, there was little connection to mutations found in adjacent skin cancers.
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  • Traditional diagnostic pathology relies on histology to identify structural changes in diseased cells but often uses additional methods like immunohistochemistry.
  • Single-cell RNA sequencing (scRNA-seq) helps analyze heterogeneous cells in diseases, yet it lacks histological context; spatial sequencing addresses this by linking mRNA expression to histological sections.
  • This review discusses current spatial transcriptome sequencing techniques, provides guidance for pathologists, and highlights its potential to integrate with scRNA-seq for better diagnosis and understanding of diseases.
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Actinic keratosis (AK) and cutaneous squamous cell carcinoma in situ (CIS) are two of the most common precursors of cutaneous squamous cell carcinoma (cSCC). However, the genomic landscape of AK/CIS and the drivers of cSCC progression remain to be elucidated. The aim of our study was to investigate the genomic alterations between AK/CIS and cSCC in terms of somatic mutations and copy number alterations (CNAs).

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  • Three-dimensional melanoma culture serves as a personalized model for testing new therapies, but its similarity to original primary tumors was previously uncertain.
  • The study involved establishing patient-derived xenograft tumors and creating 3D cultures to compare their genomic landscapes using whole-exome sequencing.
  • Results showed a high concordance of genetic profiles between the original tumors and the 3D culture models, confirming the reliability of 3D cultures in representing the original tumors.
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To decipher mutational signatures and their associations with biological implications in cutaneous melanomas (CMs), including those with a low ultraviolet (UV) signature. We applied non-negative matrix factorization (NMF) and unsupervised clustering to the 96-class mutational context of The Genome Atlas (TCGA) cohort ( = 466) as well as other publicly available datasets ( = 527). To explore the feasibility of mutational signature-based classification using panel sequencing data, independent panel sequencing data were analyzed.

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  • This study examines the genomic alterations in Bowen's disease (BD) by analyzing whole-exome sequencing from multiple lesions in three patients.
  • Researchers found a high median of 64 somatic mutations per sample, predominantly influenced by UV exposure, which accounted for about 65% of the mutations.
  • The analysis indicates that each BD lesion is genetically unique, with no shared mutations across lesions, implying varying risks of malignant progression.
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Although macrophage‒epithelioid cell (EPC)‒giant cell (GC) differentiation is acknowledged in foreign body reaction (FBR), the exact molecular features remain elusive. To discover the molecular profiles of EPC and GC, we analyzed mouse sponge and silk FBRs by integrating single-cell RNA sequencing and spatial sequencing, which identified seven cell types, including macrophages and fibroblasts. Macrophages comprised three subsets with a trajectory from M2-like cell to EPC to GC.

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Background: Neurological manifestations of COVID-19 are thought to be associated with the disease severity of COVID-19 and poor clinical outcomes. Dysregulated immune responses are considered to be mediating such complications. Our case illustrates multiple critical neurological complications simultaneously developed in a patient with non-severe COVID-19 and successful recovery with a multifaceted therapeutic approach.

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The mechanism of melanoma metastasis is poorly understood, especially at the single-cell level. To understand the evolution from primary melanoma to metastasis, we investigated single-cell transcriptome profiles of parental B16 melanoma cells (B16F0) and its highly metastatic subclone (B16F10). Genomic alterations between cells were also analyzed by whole-exome sequencing.

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