Publications by authors named "Yoko Arimizu"

Article Synopsis
  • - The study focuses on cryptic clade I (C-I) within the Escherichia genus, suggesting it's a subspecies of E. coli that is challenging to differentiate from the classic E. coli, leaving its population structure and virulence unclear.
  • - Researchers analyzed 804 isolates, identifying 465 true C-I strains, including a harmful strain linked to a patient with bloody diarrhea, finding a significant presence of virulence and antibiotic resistance genes in these strains.
  • - The results indicate that C-I strains could be emerging human pathogens, mainly sourced from bovines, highlighting the need for more extensive surveillance and studies to understand C-I strains and their impact on health better.
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Coronavirus disease 2019 (COVID-19) is an emerging infectious disease caused by severe acute respiratory syndrome 2 (SARS-CoV-2). There are many unknowns regarding the handling of long-term SARS-CoV-2 infections in immunocompromised patients. Here, we describe the lethal disease course in a SARS-CoV-2-infected patient during Bruton's tyrosine kinase inhibitor therapy.

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Certain biomarkers predict death due to acute respiratory distress syndrome in COVID-19 patients. We retrospectively analyzed biomarkers associated with time to mechanical ventilation for respiratory failure due to COVID-19 (time-to-mechanical ventilation) in 135 consecutive patients in our hospital. We analyzed biomarkers that were elevated immediately (at admission) and later (3 days after admission) using Cox proportional hazards regression analysis.

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The island codes for the enzymes necessary for synthesis of the genotoxin colibactin, which contributes to the virulence of strains and is suspected of promoting colorectal cancer. From a collection of 785 human and bovine isolates, we identified 109 strains carrying a highly conserved island, mostly from phylogroup B2, but also from phylogroups A, B1 and D. Different scenarios of acquisition were deduced from whole genome sequence and phylogenetic analysis.

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The dissemination of antimicrobial-resistant bacteria in environmental water is an emerging concern in medical and industrial settings. Here, we analysed the antimicrobial resistance of Escherichia coli isolates from river water and sewage by the use of a combined experimental phenotypic and whole-genome-based genetic approach. Among the 283 tested strains, 52 were phenotypically resistant to one or more antimicrobial agents.

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Background: The longitudinal observation of the detection of antibody responses to SARS-CoV-2 using antibody kits during the clinical course of COVID-19 is not yet fully investigated.

Objectives: To understand the significance of the detection of anti-SARS-CoV-2 antibodies, particularly IgG, using a rapid antibody kit, during the clinical course of COVID-19 patients with different severities.

Methods: Sixty-three serum samples from 18 patients (5 asymptomatic and 13 symptomatic patients) were retrospectively examined using a commercial SARS-CoV-2 IgM/IgG antibody kit.

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A 69-year-old man was admitted to our hospital under diagnosis of pneumonia due to severe acute respiratory syndrome-corona virus 2 (SARS-CoV-2) (Day 0). He underwent endotracheal intubation from Day 3. Although his respiratory condition improved and anesthetic drugs were discontinued, no cough reflex was observed despite intubation having been performed until Day 17.

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No outbreaks caused by -producing heat-labile enterotoxin LT2 have been reported to date. Here, we revealed that the O8:H8 strains isolated from patients in 2 independent diarrhea outbreaks were negative for any known virulence determinants in routine microbiological tests, were very closely related, and carried a prophage-encoded gene for a novel LT2 variant (LT2d) and the genes for colonization factor antigen III. We also showed that LT2d has a cytotonic activity similar to LT1.

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Article Synopsis
  • Pathogens like Shiga toxin-producing E. coli (STEC) and enteropathogenic E. coli (EPEC) are significant foodborne threats that can lead to serious health issues in humans, such as hemolytic uremic syndrome and infant diarrhea.
  • The study analyzed the genomes of bovine commensal strains in comparison to human strains to understand the evolution of virulence in STEC and EPEC, identifying distinct lineages where bovine and human strains are enriched.
  • The findings reveal that these pathogens acquire specific virulence genes while adapting to the bovine intestinal environment, emphasizing the need for extensive genomic studies to better understand zoonotic diseases.
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