Instance-Wise MRI Reconstruction Based on Self-Supervised Implicit Neural Representation.

Accelerated MRI involves a trade-off between sampling sufficiency and acquisition time. Supervised deep learning methods have shown great success in MRI reconstruction from under-sampled measurements, but they typically require a large set of fully-sampled MR images for training, which can be difficult to obtain. In this paper, we present a novel fully self-supervised method based on implicit neural representation, which requires only a single under-sampled MRI instance for training.

Amplitude-sensitive permutation entropy: A novel complexity measure incorporating amplitude variation for physiological time series.

Physiological time series, such as electrocardiogram (ECG) and electroencephalogram (EEG) data, are instrumental in capturing the critical dynamics of biological systems, including cardiovascular behavior and neural activity. The traditional permutation entropy (PE) methods effectively analyze the complexity of such signals but often overlook amplitude variations, which encode essential information about physiological states and pathological conditions. This paper introduces amplitude-sensitive permutation entropy (ASPE), a novel method that enhances PE by integrating amplitude information through the coefficient of variation as a weighting factor.

Electron Push-Pull Effect of Benzotrithiophene-Based Covalent Organic Frameworks on the Photocatalytic Degradation of Pharmaceuticals and Personal Care Products.

A covalent organic framework (COF) has emerged as a promising photocatalyst for the removal of pharmaceutical and personal care product (PPCP) contaminants; however, high-performance COF photocatalysts are still scarce. In this study, three COF photocatalysts were successfully synthesized by the condensation of benzo[1,2-b:3,4-b':5,6-b'']trithiophene-2,5,8-tricarbaldehyde (BTT) with 4,4',4''-(1,3,5-triazine-2,4,6-triyl)trianiline (TAPT), 1,3,5-Tris(4-aminophenyl)benzene (TAPB), and 4,4',4''-nitrilotris(benzenamine) (TAPA), namely, BTT-TAPA, BTT-TAPB, and BTT-TAPT, respectively. The surface areas of BTT-TAPA, BTT-TAPB, and BTT-TAPT were found to be 800.

DNA-compatible one-pot synthesis of multi-substituted dihydrofuran pyridinium ylide-mediated cyclization.

Synthesis of chemically diverse heterocyclic scaffolds in DNA-encoded libraries is highly demanded. We herein reported a convenient one-pot multi-component on-DNA synthetic strategy to afford multi-substituted 2,3-dihydrofuran scaffolds pyridinium ylide-mediated cyclization. This reaction exhibited modest to excellent conversions for a broad range of DNA-conjugated aldehydes, β-ketonitriles and pyridinium salts under mild reaction conditions.

The Evolution of Nucleic Acid Nanotechnology: From DNA Assembly to DNA-Encoded Library.

Deoxyribonucleic acid (DNA), a fundamental biomacromolecule in living organisms, serves as the carrier of genetic information. Beyond its role in encoding biological functions, DNA's inherent ability to hybridize through base pairing has opened new avenues for its application in biological sciences. This review introduces DNA nanotechnology and DNA-encoded library (DEL), and highlights their shared design principles related to DNA assembly.

The Furan-Thiol-Amine Reaction Facilitates DNA-Compatible Thiopyrrole-Grafted Macrocyclization and Late-Stage Amine Transformation.

We here report an efficient DNA-compatible furan-thiol-amine reaction for macrocyclization and late-stage amine transformation. This reaction, conducted under mild conditions, enables the facile cyclization of DNA-conjugated linear peptides into thiopyrrole-grafted macrocycles regardless of ring size or side-chain modification with good to excellent conversion yields. Additionally, this strategy was employed for the late-stage transformation of terminal amines, serving as critical intermediates in the construction of DNA-encoded peptide libraries.

Dynamic human gut microbiome and immune shifts during an immersive psychosocial intervention program.

Background: Although depression is a leading cause of disability worldwide, the pathophysiological mechanisms underlying this disorder-particularly those involving the gut microbiome-are poorly understood.

Method: To investigate, we conducted a community-based observational study to explore complex associations between changes in the gut microbiome, cytokine levels, and depression symptoms in 51 participants (M = 49.56, SD = 13.

Accuracy of Photogrammetry, Intraoral Scanning, and Conventional Impression for Multiple Implants: An In Vitro Study.

Objectives: This in vitro study compared the accuracy of conventional impressions (CNVs), photogrammetry (PG), and intraoral scanning (IOS) for recording implant impressions of edentulous segments, ranging from part to complete arches by different evaluation methods.

Methods: The master model for an edentulous maxillary arch was created with six implants (a-f). CNVs, PG, and IOS were used for impressions.

Evaluation of Optical Tracking to Distinguish Surgeon Experience During Endoscopic Stone Surgery.

Optical tracking (OT) has shown potential in assessing surgical skill but has yet to be evaluated for endoscopic urologic surgery. We sought to evaluate the potential for OT to distinguish expert and trainee surgeons during flexible ureteroscopy (fURS) for kidney stone treatment in both simulated and live surgical settings. We performed OT analysis of six surgeons performing stone localization during fURS in two settings.

Synthesis of Thiohydantoin Scaffolds on DNA for Focused DNA-Encoded Library Construction.

Thiohydantoin represents a significant class of biologically active privileged heterocyclic scaffolds. Herein, we present a convenient and robust DNA-compatible method for constructing a thiohydantoin-focused DNA-encoded library. This reaction can be applied to a wide variety of isothiocyanate partners, arylamine feedstocks, and diverse α-amine acid derivatives, exhibiting excellent conversions, high functional group tolerance, and preservation of DNA tag integrity.

Functional profiling of serine, threonine and tyrosine sites.

Systematic perturbation of amino acids at endogenous loci provides diverse insights into protein function. Here, we performed a genome-wide screen to globally assess the cell fitness dependency of serine, threonine and tyrosine residues. Using an adenine base editor, we designed a whole-genome library comprising 817,089 single guide RNAs to perturb 584,337 S, T and Y sites.

Effect of Crevice Size on Crevice Corrosion of N80 Carbon Steel in CO-Saturated NaCl-HAc Solution.

The effect of crevice size on the crevice corrosion of N80 carbon steel was investigated by electrochemical measurements and surface analysis in a CO-saturated NaCl-HAc solution. The N80 carbon steel exhibits a high susceptibility to crevice corrosion in this environment, which can be initiated immediately without an induction period for specimens with crevice sizes of 100 μm, 300 μm, and 500 μm. Typically, crevice solutions become more acidic during crevice corrosion; however, in this study, the crevice solution became alkaline, resulting in galvanic corrosion between the inner and outer steel surfaces and leading to severe crevice corrosion.

Dual-Pixel Raindrop Removal.

Removing raindrops in images has been addressed as a significant task for various computer vision applications. In this paper, we propose the first method using a dual-pixel (DP) sensor to better address raindrop removal. Our key observation is that raindrops attached to a glass window yield noticeable disparities in DP's left-half and right-half images, while almost no disparity exists for in-focus backgrounds.

Preparation of oxygen-sensitive proteins for high-resolution cryoEM structure determination using (an)aerobic blot-free vitrification.

High-quality grid preparation for single-particle cryogenic electron microscopy (cryoEM) remains a bottleneck for routinely obtaining high-resolution structures. The issues that arise from traditional grid preparation workflows are particularly exacerbated for oxygen-sensitive proteins, including metalloproteins, whereby oxygen-induced damage and alteration of oxidation states can result in protein inactivation, denaturation, and/or aggregation. Indeed, 99% of the current structures in the EMBD were prepared aerobically and limited successes for anaerobic cryoEM grid preparation exist.

Dynamic Human Gut Microbiome and Immune Shifts During an Immersive Psychosocial Therapeutic Program.

Background: Depression is a leading cause of disability worldwide yet its underlying factors, particularly microbial associations, are poorly understood.

Methods: We examined the longitudinal interplay between the microbiome and immune system in the context of depression during an immersive psychosocial intervention. 142 multi-omics samples were collected from 52 well-characterized participants before, during, and three months after a nine-day inquiry-based stress reduction program.

Isothiocyanate intermediates facilitate divergent synthesis of N-heterocycles for DNA-encoded libraries.

The versatile reactivity of isothiocyanate intermediates enabled the diversity-oriented synthesis (DOS) of N-heterocycles in a DNA-compatible manner. We first reported a mild conversion of DNA-conjugated amines to isothiocyanates. Subsequently, a set of diverse transformations was successfully developed to construct 2-thioxo-quinazolinones, 1,2,4-thiadiazoles, and 2-imino thiazolines.

A Polygenic Risk Analysis for Identifying Ulcerative Colitis Patients with European Ancestry.

The incidence of ulcerative colitis (UC) has increased globally. As a complex disease, the genetic predisposition for UC could be estimated by the polygenic risk score (PRS), which aggregates the effects of a large number of genetic variants in a single quantity and shows promise in identifying individuals at higher lifetime risk of UC. Here, based on a cohort of 2869 UC cases and 2900 controls with genotype array datasets, we used PRSice-2 to calculate PRS, and systematically analyzed factors that could affect the power of PRS, including GWAS summary statistics, population stratification, and impact of variants.

Cognitive load in tele-robotic surgery: a comparison of eye tracker designs.

Purpose: Eye gaze tracking and pupillometry are evolving areas within the field of tele-robotic surgery, particularly in the context of estimating cognitive load (CL). However, this is a recent field, and current solutions for gaze and pupil tracking in robotic surgery require assessment. Considering the necessity of stable pupillometry signals for reliable cognitive load estimation, we compare the accuracy of three eye trackers, including head and console-mounted designs.

Intraoperative gaze guidance with mixed reality.

Efficient communication and collaboration are essential in the operating room for successful and safe surgery. While many technologies are improving various aspects of surgery, communication between attending surgeons, residents, and surgical teams is still limited to verbal interactions that are prone to misunderstandings. Novel modes of communication can increase speed and accuracy, and transform operating rooms.

Effect of Tb and Ce Co-doping on the Structure and Photoluminescence Properties of Hexagonal Boron Nitride Phosphors.

In the paper, we have successfully prepared hexagonal boron nitride (h-BN:Tb, Ce) phosphors with melamine as the nitrogen source. The X-ray powder diffraction patterns confirm that the sample possesses a hexagonal crystal structure within the P m2 space group. It is interesting that the co-doping combination of Tb and Ce can markedly enhance the threshold concentration of doped activators within the limited solid solution of h-BN phosphors.