Publications by authors named "Yilu Lu"

Article Synopsis
  • - Pompe disease is a serious genetic disorder that leads to heart issues, muscle weakness, and breathing problems; this study seeks to find new markers related to the infantile form of the disease by studying gene expression and immune cell presence in affected muscles.
  • - Researchers analyzed gene expression data from two datasets and used machine learning techniques like SVM-RFE and LASSO to identify potential biomarkers, discovering key genes GPNMB, CALML6, and TRIM7 that correlate with immune cells involved in the disease.
  • - While the study identified important connections between these genes and immune cell activity, previous research has indicated a lack of substantial immune cell presence in muscle biopsies from Pompe patients, suggesting a need for more laboratory experiments to confirm these
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Pyruvate kinase M2 (PKM2), a subtype of pyruvate kinase, plays a crucial role as a key enzyme in the final step of glycolysis. It is involved in regulating the tumor microenvironment and accelerating tumor progression. However, the relationship between PKM2 expression and the prognosis and immune infiltration remains unclear in lung cancer.

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  • - The COMP gene encodes a protein crucial for cartilage formation, and mutations in this gene can lead to pseudoachondroplasia (PSACH), a condition characterized by short stature and limb dwarfism.
  • - Researchers studied a specific pathogenic variant (c.875G > A, p.Cys292Tyr) in the COMP gene using various methods such as 3D structural analysis and immunofluorescence to understand its effects on protein behavior.
  • - The findings revealed that the variant causes changes in protein structure, leading to excessive accumulation of the mutant protein in the cell's cytoplasm, which is associated with the PSACH condition in a Chinese family.
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Background: NPHS2 is the causative gene of nephrotic syndrome type 2 (MIM 600995) which often clinically manifests as steroid-resistant nephrotic syndrome (SRNS). The NPHS2 gene encodes a slit diaphragm (SD) associated protein podocin.

Objective: This study reported a novel disease-causing mutation of NPHS2 in a Chinese family with SRNS.

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Objective: To explore the genetic basis for a Chinese patient with retinitis pigmentosa (RP).

Methods: Whole exome sequencing (WES) was carried out to screen potential variant in the proband. Candidate variants were determined by taking consideration of clinical phenotype.

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Background: Cone dystrophy with supernormal rod response (CDSRR) is an autosomal recessive retinal disorder characterized by myopia, dyschromatopsia, nyctalopia, photophobia, and nystagmus. CDSRR is caused by mutations in KCNV2, the gene encoding for an electrically silent Kv subunit (Kvs) named Kv8.2.

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Esophageal squamous cell carcinoma (ESCC) is one of the most common malignancies and cause of death from cancer in China. Previous studies showed that autophagy and apoptosis inhibition are critical for the survival of ESCC cells. However, the underlying mechanisms remain to be clarified.

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Background: Duchenne muscular dystrophy (DMD) is a fatal X-linked recessive disorder with no effective treatment, which underscores the importance of avoiding the birth of children with DMD by identifying pathogenic mutations and obtaining an accurate prenatal diagnosis.

Objective: The objective of this study was to analyze the genetic defect of a Chinese family where all male patients have died of DMD.

Methods: Multiplex ligation dependent probe analysis (MLPA) and next-generation sequencing (NGS) were employed to detect DMD mutations.

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PIWIL2 belongs to the PIWI protein subfamily and is widely expressed in a variety of tumors. Previous studies have shown that PIWIL2 has the characteristics of oncogene. Recently we reported that PIWIL2 suppresses GSK3β activity to regulate circadian rhythms through SRC-PI3K-AKT pathway.

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Article Synopsis
  • Circadian rhythms are regulated by clock proteins and their modifications, but the role of circadian genes in cancer cells is not well understood.
  • PIWIL1 has been identified as a factor in cancer development and has now been shown to suppress circadian rhythms in cancer cells.
  • Through interactions with SRC and activation of the PI3K-AKT signaling pathway, PIWIL1 inhibits key clock proteins CLOCK and BMAL1, highlighting its role in linking circadian rhythm disruption to tumorigenesis.
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Objective: To analyze the clinical characteristics and genetic features of a family affected with isolated proteinuria.

Methods: Clinical data of the family was collected. Mutations of 191 renal disease-related genes in the proband were screened with next generation sequencing (NGS).

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Circadian rhythm is an autoregulatory rhythm, which is sustained by various mechanisms. The nucleocytoplasmic shuttling of BMAL1 is essential for CLOCK translocation between cytoplasm and nucleus and maintenance of the correct pace of the circadian clock. Here we showed that RAE1 and NUP98 can promote the degradation of BMAL1 and CLOCK.

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Some X-linked genes necessary for spermiogenesis are specifically activated in the postmeiotic germ cells. However, the regulatory mechanism about this activation is not clearly understood. Here, we examined the potential mechanism controlling the transcriptional activation of the mouse testis specific gene A8 (Tsga8) gene in round spermatids.

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Circadian genes control most of the physiological functions in cancer cells, including cell proliferation, migration, and invasion. The CLOCK and BMAL1 complex plays a central role in circadian rhythms. Previous studies have shown that circadian genes may act as oncogenes or tumor-suppressor genes.

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Article Synopsis
  • HDAC3 is important for regulating gene transcription and is linked to cancer development, but how it is controlled in cancer is not well understood.
  • This study found that PIWIL2 interacts with HDAC3, preventing its degradation and enhancing its activity, which is further boosted by CK2α.
  • The research shows that PIWIL2 promotes cancer cell growth and reduces cell death by influencing HDAC3, providing new insights into its role in tumor development.
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The core circadian gene CLOCK plays an important role in regulating male reproduction. However, the underlying mechanism still remains unclear. In the present study, we executed yeast two-hybrid screening using cDNA fragment of CLOCK PAS A domain as bait, and identified RANBP9 as a novel protein interacting with CLOCK.

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Pseudoachondroplasia (PSACH) is an autosomal dominant osteochondrodysplasia caused by mutations in the gene encoding cartilage oligomeric matrix protein (COMP). Accurate clinical diagnosis of PSACH is sometimes difficult. Here, we identified a novel mutation (c.

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Circadian rhythms are regulated by transcriptional and post-translational feedback loops generated by appropriate functions of clock proteins. Rhythmic degradation of the circadian clock proteins is critical for maintenance of the circadian oscillations. Notably, circadian clock does not work during spermatogenesis and can be disrupted in tumors.

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Circadian clock and Smad2/3/4-mediated Nodal signaling regulate multiple physiological and pathological processes. However, it remains unknown whether Clock directly cross-talks with Nodal signaling and how this would regulate embryonic development. Here we show that Clock1a coordinated mesoderm development and primitive hematopoiesis in zebrafish embryos by directly up-regulating Nodal-Smad3 signaling.

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11β-hydroxylase deficiency (11β-OHD) occurs in about 5-8% of congenital adrenal hyperplasia (CAH). In this study, we identified three CYP11B1 (encoding Cytochrome P450 11B1) heterozygous mutations: c.1358G>C (p.

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Human PIWIL2, aka HILI, is a member of PIWI protein family and overexpresses in various tumors. However, the underlying mechanisms of HILI in tumorigenesis remain largely unknown. TBCB has a critical role in regulating microtubule dynamics and is overexpressed in many cancers.

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The ectopic activation of NR0B1 is involved in the development of some cancers. However, the regulatory mechanisms controlling NR0B1 expression are not well understood. Therefore, the epigenetic modifications promoting NR0B1 activation were examined in this study.

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Human PIWIL1, alias HIWI, is a member of Piwi protein family and expressed in various tumors. However, the underlying mechanism of PIWIL1 in tumorigenesis remains largely unknown. Stathmin1 is a cytosolic phosphoprotein which has a critical role in regulating microtubule dynamics and is overexpressed in many cancers.

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Article Synopsis
  • The study aimed to identify protein interaction partners of PER1, a key player in circadian rhythms, using a bacterial two-hybrid system.
  • Fourteen protein coding genes were identified as potential interaction partners, including genes involved in mitochondrial dynamics and copper metabolism.
  • Understanding these interactions could reveal new insights into how the circadian clock protein PER1 functions in the context of tumor development.
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  • c-Myc is a key regulator of cell processes, with abnormal overexpression linked to tumor growth and spread.
  • The study found that PIWIL2 can enhance c-Myc levels by working with NME2 to target the c-Myc promoter.
  • Lack of PIWIL2 hinders c-Myc expression, cell cycle progression, and cell proliferation, highlighting its role in cancer cell behavior.
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