Publications by authors named "Yihan Chen"

Bacterial biofilms are hotspots for the natural transformation of antibiotic resistance genes (ARGs). Antibiotics and heavy metals at the sub-minimal inhibitory concentrations (sub-MICs) are ubiquitous in water environments, but their impact on the ARG dissemination via natural transformation in biofilms and the biofilm development remains poorly understood. This study found that the individual stressors including tetracycline, sulfamethoxazole, and Zn at the sub-MIC levels, significantly enhanced ARG transformation.

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Difucosyllactose (DFL), a representative bisfucosylated oligosaccharide found in human milk, has garnered significant attention due to its immense health benefits. To date, several plasmid-based engineered strains have been established for DFL synthesis. However, these strains face challenges such as antibiotic dependence and plasmid instability, which limit their commercial application in the food industry.

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Background: Genetic mitochondrial diseases are a major challenge in modern medicine. These impact ~ 1:4,000 individuals and there are currently no effective therapies. Leigh syndrome is the most common pediatric presentation of mitochondrial disease.

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In this study, a large drinking water reservoir (Fengshuba Reservoir) was chosen as a representative case, and the bacterial communities in the sediments and soils of Water-level fluctuating zone (WLFZ) as well as their responses to heavy metals (HMs) and polycyclic aromatic hydrocarbons (PAHs) were systematically investigated. The results indicated that the abundance and diversity of the bacterial community obviously changed with seasonal hydrological variations in sediments, and the absolute abundance and composition of bacteria community differed significantly between the sediment phase and soil phase. Bacteria with the ability to degrade pollutants rapidly proliferate and gain ascendancy in the soil phase, with Burkholderia-Caballeronia-Paraburkholderia (B-C-P) and Bradyrhizobium forming the core of the largest community.

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Macrocyclization is a compelling strategy for conventional drug design for improving biological activity, target specificity, and metabolic stability, but it was rarely applied to the design of PROTACs possibly due to the mechanism and structural complexity. Herein, we report the rational design of the first series of "Head-to-Tail" macrocyclic PROTACs. The resulting molecule exhibited pronounced Brd4 protein degradation with low nM DC values while almost totally dismissing the "hook effect", which is a general character and common concern of a PROTAC, in multiple cancer cell lines.

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Viral infections trigger the integrated stress response (ISR) in eukaryotic cells that leads to the activation of eIF2α kinases, the elevation of eukaryotic translation initiation factor 2α (eIF2α) phosphorylation, and thereby the shutdown of global protein synthesis that viruses rely on to replicate. Coronaviruses and other viruses have evolved various subversion mechanisms to counteract the antiviral ISR. These intricate host-virus interactions may be exploited by pharmacologically activating the host ISR for the development of host-directed antivirals (HDAs), an increasingly relevant area of research.

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Hydrogen sulfide (HS) shows promise in treating myocardial ischemia-reperfusion injury (MIRI), but the challenge of controlled and sustained release hinders its clinical utility. In this study, we developed a platelet membrane-encapsulated mesoporous silica nanoparticle loaded with the HS donor diallyl trisulfide (PM-MSN-DATS). PM-MSN-DATS demonstrated optimal encapsulation efficiency and drug-loading content.

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Introduction: Cell fate determination and transition are of paramount importance in biology and medicine. Naive pluripotency could be achieved by reprogramming differentiated cells. However, the mechanism is less clear.

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Background: Eosinophilic gastrointestinal diseases are the rare gastrointestinal disorders. To our knowledge, there have been no reports of eosinophilic gastrointestinal diseases with overall gastrointestinal tract involvement causing liver abscess in an older patient.

Case Presentation: We report a 68-year-old man with eosinophilic gastrointestinal disease with overall gastrointestinal tract involvement.

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Article Synopsis
  • The study explores the potential of genetically modifying dental pulp stem cells (DPSCs) to reduce their immune response after transplantation, which is a significant barrier for their use in treating ischemic diseases.
  • Individual knockdowns of Beta 2-microglobulin (B2M) and class II histocompatibility complex transactivator (CIITA) were performed using lentiviral methods, showing that these modifications did not affect the stem cells' ability to self-renew or differentiate.
  • Results demonstrated that the modified DPSCs had lower immune system recognition and higher survival rates when exposed to immune challenges, suggesting genetic knockdowns could enhance the viability of DPSCs in therapeutic applications.
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Heterogeneous Mg-Fe oxide/biochar (MgFeO@BC) nanocomposites were synthesized by a co-precipitation method and used as biochar-based catalysts to activate peroxymonosulfate (PMS) for sulfamethoxazole (SMX) removal. The optimal conditions for SMX degradation were examined as follows: pH 7.0, MgFeO@BC of 0.

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In this work, rice-husk-derived biochar (RBC) was synthesized by using simple one-step pyrolysis strategies and served as catalysts to activate peroxymonosulfate (PMS) for degrading sulfamethoxazole (SMX). When the annealing temperature (T) = 800 °C, RBC exhibits the typical hardwood structure with several micropores and mesoporous. Furthermore, RBC obtains more defect sites than RBC, RBC, and RBC.

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Article Synopsis
  • Integrin alpha 5 (ITGA5) is linked to cancer prognosis, yet its specific role in clear cell renal cell carcinoma (ccRCC) and its influence on tumor progression and the tumor microenvironment (TME) needed further investigation.
  • Researchers used a machine learning model to analyze how ITGA5 expression impacts ccRCC, finding that higher levels are associated with adverse tumor characteristics and correlated with VHL mutations.
  • The study suggests that high ITGA5 levels create an immunosuppressive TME by reducing CD8+ T cell infiltration, and proposes that combining ITGA5 inhibitors with VEGFR-targeted drugs could be an effective treatment strategy.
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Article Synopsis
  • - The study investigates the presence and role of an intrinsic cholinergic system in the heart, which uses acetylcholine (ACh) to manage electrical conduction and its link to arrhythmias in humans and mice.
  • - Researchers identified key components of this system, such as ACh receptors and transporters, showing that they significantly influence how electrical signals are conducted in heart cells.
  • - Findings suggest that defects in this cholinergic system can lead to serious ventricular arrhythmias, highlighting new mechanisms for understanding heart rhythm disorders beyond traditional views.
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  • Dilated cardiomyopathy (DCM) can lead to heart failure and is marked by immune cell infiltration; researchers conducted extensive analysis on various datasets to identify key genes and biomarkers related to this condition.
  • Using tools like CytoHubba and ssGSEA, the study pinpointed important diagnostic biomarkers (OMD and THBS4) and revealed their connections to immune cells, while also predicting transcription factors, microRNAs, and potential drug candidates.
  • Validation in a mouse model confirmed that these biomarkers correlate with gene expression trends found in earlier bioinformatic analyses, offering new insights for diagnosing and treating DCM with heart failure.
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In this study, Fe, N co-doped biochar (Fe@N co-doped BC) was synthesized by the carbonization-pyrolysis method and used as a carbocatalyst to activate peroxymonosulfate (PMS) for sulfamethoxazole (SMX) removal. In the Fe@N co-doped BC/PMS system, the degradation efficiency of SMX (10.0 mg·L) was 90.

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Article Synopsis
  • Multiple myeloma (MM) initially manifesting in the sphenoid sinus and skull base is rare, with a systematic review of 34 cases highlighting the challenges of early diagnosis and treatment, particularly for the IgD-λ subtype.
  • A unique case of IgD-λ MM showed symptoms like dizziness and blindness, leading to a confirmed diagnosis and a wide range of diagnostic tests, including advanced imaging and biopsies.
  • The study emphasizes the importance of using CT and MRI scans for detecting bone damage, and suggests that endoscopic procedures are effective for tissue biopsies, which can improve diagnosis in asymptomatic regions like the paranasal sinuses.
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Article Synopsis
  • The study focuses on the SALL2 gene, part of the spalt gene family, and its critical role in mouse embryo development, particularly in the nervous system.
  • * Researchers found that SALL2 is essential for neural differentiation, as Sall2 knockout embryonic stem cells showed impaired ability to become neural stem cells and create neural tube organoids.
  • * Utilizing ChIP-seq, the study identified Tuba1a as a key target gene influenced by SALL2, highlighting its importance in understanding potential human nervous system disorders linked to SALL2 mutations.
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Previous research has established that bilinguals automatically activate lexical items in both of their languages in a nonselectivemanner, even when processing linguistic information in the second language (L2) alone. However, whether this co-activation extends to the sub-lexical level remains debated. In this study, we investigate whether bilinguals access sub-lexical information while processing in their L2.

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Extracellular vesicles (EVs) derived from mesenchymal stem cells (MSCs) for the treatment of bone defects have been widely reported as a cell-free therapy because of their appropriate stability and biocompatibility. However, EV isolation is expensive and time-consuming. We developed a method of modifying EVs derived from bone marrow MSCs (BMSCs) via the cationic polymer (ERP) with characteristics of charge reversal and esterase response (ERP-EVs).

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Studies have shown that Small conductance Ca2 + -activated K+ (SK) channel are expressed in fibroblasts. We aimed to determine the expression of SK2 channels in cardiac fibroblasts during myocardial hypertrophy and investigate its relationship with fibrotic remodeling. Myocardial hypertrophy and fibrotic remodeling induced by transverse aortic constriction (TAC) were assessed by echocardiography, Masson's trichrome staining and Western blot.

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Cardiac biological pacing (BP) is one of the future directions for bradyarrhythmias intervention. Currently, cardiac pacemaker cells (PCs) used for cardiac BP are mainly derived from pluripotent stem cells (PSCs). However, the production of high-quality cardiac PCs from PSCs remains a challenge.

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Food allergy (FA) has increasingly attracted global attention in past decades. However, the mechanism and effect of FA are complex and varied, rendering it hard to prevention and management. Most of the allergens identified so far are macromolecular proteins in food and may have potential cross-reactions.

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Recent research on fluoride in water primarily focuses on groundwater; however, the potential environmental risks of fluoride in urban rivers should not be overlooked. In 2023, this study collected 135 surface water samples from the Ershibu River in Hefei, China, during various flood periods. Through descriptive statistical analysis, correlation analysis, principal component analysis-multiple linear regression (PCA-MLR) modeling, hazard quotient (HQ) assessment, and Monte Carlo simulation analysis, the spatial and temporal distribution, potential sources, and health risks of fluoride were investigated.

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