Publications by authors named "Yi-Lin Chen"

Ethnopharmacological Relevance: Huashi Baidu Granule (HSBDG), a traditional Chinese medicine (TCM), is used for treating coronavirus disease 2019 (COVID-19). Porcine reproductive and respiratory syndrome (PRRS) is considered the "COVID-19" for swine. According to the TCM theory, "dampness" is the main pathogenic factor in COVID-19 and PRRS, and "Huashi" means that this formula is good at removing "dampness".

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  • Amplification of the HER2 receptor and overexpression of estrogen and progesterone receptors are crucial for planning breast cancer treatments, but resistance to drugs is common, highlighting the need for new advances.
  • This study is the first to reveal that EMP3, a membrane protein, interacts with HER2 in breast cancer, promoting cell growth, invasion, and migration while increasing estrogen and progesterone receptor levels.
  • Knocking down EMP3 reduced breast cancer cell growth and increased sensitivity to the drug trastuzumab, suggesting that targeting EMP3 could be a promising new treatment strategy for patients, especially in those with co-expression of EMP3 and HER2.
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Large-scale proteomics studies can refine our understanding of health and disease and enable precision medicine. Here, we provide a detailed atlas of 2,920 plasma proteins linking to diseases (406 prevalent and 660 incident) and 986 health-related traits in 53,026 individuals (median follow-up: 14.8 years) from the UK Biobank, representing the most comprehensive proteome profiles to date.

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The quality of protective immunity plays a critical role in modulating vaccine efficacy, with native antigens often not able to trigger sufficiently strong immune responses for pathogen killing. This warrants creation of structure-based vaccine design, leveraging high-resolution antigen structures for mutagenesis to improve protein stability and efficient immunization strategies. Here, we investigated the mechanisms underlying structure-based vaccine design using CspZ-YA, a vaccine antigen from , the bacteria causing Lyme disease (LD), the most common vector-borne disease in the Northern Hemisphere.

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  • - The study aimed to explore how macular microcirculation is related to kidney function in non-diabetic hypertensive patients and whether macular parameters could be used to track kidney health.
  • - Researchers analyzed 62 patients, dividing them into those with renal dysfunction and those with normal kidney function, using optical imaging techniques to assess macular microcirculation.
  • - Results showed that patients with renal dysfunction had significantly lower measurements of macular microcirculation, suggesting that these parameters could be useful for monitoring kidney function in this group.
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Proteomic alterations preceding the onset of depression offer valuable insights into its development and potential interventions. Leveraging data from 46,165 UK Biobank participants and 2920 plasma proteins profiled at baseline, we conducted a longitudinal analysis with a median follow-up of 14.5 years to explore the relationship between plasma proteins and incident depression.

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Whether left ventricular structure and function is associated with sodium dietary intake and renal handling while considering blood pressure (BP) remains unclear. Consecutive untreated patients referred for ambulatory BP monitoring were recruited. Standard echocardiography was performed to measure left ventricular structure and function.

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  • * The causes of HCC are complex, including factors like hepatitis infections and lifestyle choices, leading to its classification as "genomically unstable" due to frequent DNA damage.
  • * Recent advancements in immunotherapy show promise for HCC treatment, with genomic instability correlating positively with the success of these therapies, underscoring the importance of genome stability biomarkers in improving patient outcomes.
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Microsatellite instability (MSI) status is a prognostic biomarker for immunotherapy in certain types of cancers, such as colorectal cancers (CRCs) and endometrial cancers (ECs). Tumors that are categorized as having high MSI (MSI-H) express high levels of neoantigens for immune recognition. The typical MSI test measures the length of short mononucleotide repeats (SMR) poly(A) 21-27; however, a limitation of this test is the difficulty in determining the shift size, particularly in endometrial cancer.

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  • Developing broad-spectrum coronavirus vaccines is crucial for future pandemic preparedness against respiratory viruses.* -
  • A trivalent subunit vaccine was created using receptor-binding domains from three coronaviruses: SARS-CoV, MERS-CoV, and SARS-CoV-2 XBB.1.5, combined with adjuvants Alum and CpG55.2.* -
  • Vaccinated mice showed cross-neutralizing antibodies for all three Betacoronaviruses and some bat-exclusive viruses, suggesting good epitope preservation and potential for broader immune response.*
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  • Alzheimer's disease (AD) has complex genetics largely studied in European populations, but this study involved a GWAS with 6,878 Chinese and 63,926 European individuals to explore new genetic links to AD.
  • The research identified three new susceptibility loci (KIAA2013, SLC52A3, and TCN2) in Chinese participants and highlighted a unique variant (rs1815157) within EGFR.
  • The findings suggest that including diverse populations is key for understanding AD's genetic basis and show that high mean corpuscular hemoglobin concentration could offer some protection against the disease.
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  • - The study examined the genetic links of protein-coding variants to immune-mediated diseases (IMDs) by analyzing whole exome sequencing data from over 350,000 UK Biobank participants and discovered 162 unique genes across 35 IMDs, with 124 of those being previously unknown.
  • - Key genes, including FLG associated with atopic dermatitis and asthma, were found to influence both rare and common genetic variants, while 91 genes significantly affected health outcomes over time.
  • - The research also revealed five causal genes that correspond to approved drug targets and highlighted how mutations in certain genes might impact protein expression related to various IMDs, ultimately suggesting new avenues for targeted therapies.
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  • A recent study identified potential new biomarkers for Alzheimer's disease (AD) through an extensive analysis of over 6,300 cerebrospinal fluid proteins from the ADNI database, highlighting YWHAG as a leading candidate for diagnosis.
  • The study demonstrated that combinations of proteins (four or five) significantly improved diagnostic accuracy for AD, showing exceptional performance in distinguishing between AD and non-AD cases.
  • Findings suggest these biomarkers could predict clinical progression to AD dementia and are linked to cognitive decline, with implications for future clinical trials targeting various disease mechanisms.
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  • The text outlines the process for creating mRNA from DNA templates, detailing the steps for transcription, capping, and labeling of the mRNA.
  • It discusses various characterization techniques such as UV and fluorescence spectrophotometry, gel electrophoresis, and the use of the Bioanalyzer for higher resolution analysis of the synthesized RNA.
  • Lastly, it provides protocols for testing the synthesized mRNA in primary cell cultures, including methods for confirming translation through intracellular staining and western blotting.
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Background: A large number of studies have shown that leptin plays an important role in the regulation of fertility via the hypothalamus-pituitary-gonad axis. However, its peripheral function in epididymis was still elusive.

Objective: The purpose of this study was to determine the pro-secretion effect of leptin on the rat epididymal epithelium.

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Evaluating the heterogeneity of extracellular vesicles (EVs) is crucial for unraveling their complex actions and biodistribution. Here, we identify consistent architectural heterogeneity of EVs using cryogenic transmission electron microscopy (cryo-TEM), which has an inherent ability to image biological samples without harsh labeling methods while preserving their native conformation. Imaging EVs isolated using different methodologies from distinct sources, such as cancer cells, normal cells, immortalized cells, and body fluids, we identify a structural atlas of their dominantly consistent shapes.

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Background: Many studies have indicated that inadequate health-related behavior is associated with the progression of cancer and cardiometabolic disorders. Because patients with hepatocellular carcinoma may adopt inadequate health behaviors, they are at risk for cancer recurrence, mortality, cardiometabolic disease progression, and worse quality of life.

Objective: To explore the prevalence of cardiometabolic risks and health-promoting behaviors associated with quality of life among patients with hepatocellular carcinoma after treatment.

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  • Aberrant trophoblastic differentiation in various human cancers is linked to poor differentiation, metastasis, and resistance to treatment, often indicated by altered β-hCG expression.
  • Current β-hCG-targeting vaccines have shown limited success, highlighting the need for a deeper understanding of the molecular mechanisms behind this phenomenon.
  • Key signaling pathways involved include TGF-β receptor, c-MET, and ERK1/2, suggesting these may be viable targets for developing more effective, precision therapies for aggressive cancers.
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  • * The study improved the purification process for a tag-free version of the CspZ-YA protein expressed in E. coli, addressing previous issues with stabilization and formulation.
  • * Findings revealed that a buffer with a pH of 6.5 to 8.5 effectively stabilizes the protein and that optimal salinity levels enhance its long-term storage, contributing to better vaccine development strategies.
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Evaluating the heterogeneity of extracellular vesicles (EVs) is crucial for unraveling their complex actions and biodistribution. Here, we identify consistent architectural heterogeneity of EVs using cryogenic transmission electron microscopy (cryo-TEM) which has an inherent ability to image biological samples without harsh labeling methods and while preserving their native conformation. Imaging EVs isolated using different methodologies from distinct sources such as cancer cells, normal cells, and body fluids, we identify a structural atlas of their dominantly consistent shapes.

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  • Epidermal growth factor receptor tyrosine kinase inhibitors (EGFR-TKIs) are commonly used to treat non-small cell lung cancer (NSCLC) in patients with confirmed EGFR mutations, but false negatives in molecular tests can occur.
  • A pilot study using peptide nucleic acid (PNA) clamping-sequencing, which is highly sensitive, showed promising results in better identifying patients who would benefit from EGFR-TKI therapy.
  • Data from 1,783 lung cancer cases indicated that combining RT-qPCR with PNA-sequencing improves the accuracy of detecting EGFR mutations, potentially leading to better treatment decisions and longer patient survival.
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  • The study assessed the diagnostic potential of myocardial work indices using speckle tracking echocardiography to identify cardiac fibrosis in patients with primary aldosteronism, involving 48 patients.
  • Findings revealed that those with cardiac fibrosis (62.5% of patients) had longer hypertension duration, higher left ventricular mass, and lower global work efficiency compared to those without fibrosis.
  • The global work efficiency (GWE) showed a strong correlation with cardiac fibrosis, outperforming other metrics like left ventricular mass index and NT-proBNP, with a sensitivity of 76.7% and specificity of 83.3%.
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Induction of DNA damage response (DDR) to ensure accurate duplication of genetic information is crucial for maintaining genome integrity during DNA replication. Cellular senescence is a DDR mechanism that prevents the proliferation of cells with damaged DNA to avoid mitotic anomalies and inheritance of the damage over cell generations. Human WWOX gene resides within a common fragile site FRA16D that is preferentially prone to form breaks on metaphase chromosome upon replication stress.

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