Publications by authors named "Ye Hwan Kim"

Background: Primary ciliary dyskinesia (PCD) is an inherited autosomal-recessive disorder of impaired mucociliary clearance characterized by chronic respiratory diseases, otolaryngological diseases, central nervous system abnormalities, reproductive system abnormalities, and cardiac function abnormalities. General anesthesia in these patients is associated with a higher incidence of respiratory complications than in patients without the disease.

Case Summary: A 16-year-old male patient was referred to the emergency room complaining of right ankle pain due to distal tibiofibular fracture.

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Screening for genes or markers relevant to bladder cancer (BC) tumorigenesis and progression is of vital clinical significance. The present study used reverse-transcription quantitative PCR reaction assays to examine the expression of mRNA encoding Rho GTPase-activating protein 9 (ARHGAP9) in BC tissue samples and to determine whether is an independent prognostic biomarker for non-muscle invasive BC (NMIBC) and muscle invasive BC (MIBC). The results revealed that the downregulation of expression in the tissue of patients with NMIBC or MIBC was significantly associated with a poor prognosis.

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Background: Disease monitoring in non-muscle-invasive bladder cancer (NMIBC) patients is crucial for early identification of disease recurrence and progression. High IQGAP3/BMP4 and IQGAP3/FAM107A ratios in urinary cell-free DNA (ucfDNA) are a diagnostic biomarker for bladder cancer. We aimed to investigate whether the levels of these biomarkers in ucfDNA can be used to monitor disease recurrence or progression in patients with NMIBC.

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Background: Cell division cycle 6 (CDC6) is an essential regulator of DNA replication and plays important roles in the activation and maintenance of the checkpoint mechanisms in the cell cycle. CDC6 has been associated with oncogenic activities in human cancers; however, the clinical significance of CDC6 in prostate cancer (PCa) remains unclear. Therefore, we investigated whether the mRNA expression level is a diagnostic and prognostic marker in PCa.

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Article Synopsis
  • This study investigated the use of urinary cell-free DNA (ucfDNA) as a noninvasive method for diagnosing bladder cancer (BC) compared to patients with hematuria.
  • Researchers analyzed gene expression ratios in a cohort of 355 patients to identify significant differences that could serve as markers for BC.
  • Results showed that specific gene ratios (IQGAP3/BMP4 and IQGAP3/FAM107A) were significantly elevated in BC patients, leading to the development of a discriminant score index with strong diagnostic accuracy.
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The most common symptom of bladder cancer (BC) is hematuria. However, not all patients with hematuria are diagnosed with BC. Here, we explored a novel method to discriminate BC from hematuria under nonmalignant conditions by measuring differences in urinary cell-free microRNA (miRNA) expression between patients with BC and those with hematuria.

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Background: Differentially expressed genes and their post-transcriptional regulator-microRNAs (miRNAs), are potential keys to pioneering cancer diagnosis and treatment. The aim of this study was to investigate how the miRNA-mRNA interactions might affect the tumorigenesis of bladder cancer (BC) and to identify specific miRNA and mRNA genetic markers in the two BC types: non-muscle invasive bladder cancer (NMIBC) and muscle invasive bladder cancer (MIBC).

Results: We identified 227 genes that interacted with 54 miRNAs in NMIBC, and 14 genes that interacted with 10 miRNAs in MIBC.

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Background: There is growing interest in developing new non-invasive diagnostic tools for bladder cancer (BC) that have better sensitivity and specificity than cystoscopy and cytology. This study examined the value of urinary cell-free nucleic acid (NA) as a diagnostic marker for BC.

Material And Methods: A total of 81 patients (74 BC and 7 normal controls) were used for a tissue set, and 212 patients (92 BC and 120 normal controls) were used as a urine set.

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  • This study focuses on pT1 high-grade bladder cancer (BC), which has a high chance of progression, and aims to validate a molecular progression risk score (MoPRS) for predicting when muscle-invasive disease occurs.
  • Researchers analyzed an 8-gene classifier in 121 new patients, finding that 23.1% experienced progression to muscle-invasive BC, with higher MoPRS scores linked to greater risk.
  • The MoPRS is identified as an independent predictor of invasive BC and could be useful for determining which patients may need more aggressive treatment, like early surgery.
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Although various mechanisms of castration-resistant prostate cancer (CRPC) have been discovered, reliable biomarkers for monitoring CRPC progression are lacking. We sought to identify molecules that predict the progression of advanced prostate cancer (AdvPC) into CRPC. The study used primary-site samples (=45 for next-generation sequencing (NGS); =243 for real-time polymerase chain reaction) from patients with prostate cancer (PC).

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The present study examined the utility of fibroblast growth factor receptor 3 () mutation status and gene expression as a prognostic marker in primary pT1 bladder cancer (BC). A total of 120 patients with primary pT1 BC were enrolled. mutation status was determined by direct sequencing and mRNA expression level was determined by reverse transcription-quantitative polymerase chain reaction (RT-qPCR) analysis.

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Background: There is growing interest in circulating nucleic acids as cancer detection biomarkers. Therefore, the aim of the present study was to identify a key urinary cell-free RNA marker that may assist in the diagnosis of BC.

Results: Five cell-free RNAs were selected as candidate cell-free RNAs from tissue microarray data.

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Purpose: Previously, we reported the presence of virus-encoded microRNAs (miRNAs) in the urine of prostate cancer (CaP) patients. In this study, we investigated the expression of two herpes virus-encoded miRNAs in prostate tissue.

Methods: A total of 175 tissue samples from noncancerous benign prostatic hyperplasia (BPH), 248 tissue samples from patients with CaP and BPH, and 50 samples from noncancerous surrounding tissues from these same patients were analyzed for the expression of two herpes virus-encoded miRNAs by real-time polymerase chain reaction (PCR) and immunocytochemistry using nanoparticles as molecular beacons.

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Article Synopsis
  • * Researchers analyzed 135 bladder cancer samples and 26 healthy control samples, linking specific urinary metabolites to the genes responsible for their metabolism.
  • * Significant disruptions were identified in the carnitine-acylcarnitine and tryptophan pathways, with key genes related to these pathways being notably downregulated in cancerous tissues compared to normal tissues.
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Purpose: Topoisomerase-II alpha (TopoIIA ), a DNA gyrase isoform that plays an important role in the cell cycle, is present in normal tissues and various human cancers, and can show altered expression in both. The aim of the current study was to examine the value of urinary TopoIIA cell-free DNA as a noninvasive diagnosis of bladder cancer (BC).

Materials And Methods: Two patient cohorts were examined.

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The potential use of urinary nucleic acids as diagnostic markers in prostate cancer (PCa) was evaluated. Ninety-five urine samples and 234 prostate tissue samples from patients with PCa and benign prostatic hyperplasia (BPH) were analyzed. Micro-array analysis was used to identify candidate genes, which were verified by the two-gene expression ratio and validated in tissue mRNA and urinary nucleic acid cohorts.

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Mps one binder (MOB) proteins are integral components of signaling pathways that control important cellular processes, such as mitotic exit, centrosome duplication, apoptosis, and cell proliferation. However, the biochemical and cellular functions of the human MOB (hMOB) protein family remain largely unknown. The present study investigated the association between hMOB3B expression and clinicopathological characteristics of prostate cancer (PCa).

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Purpose: MicroRNAs (miRNAs) in biological fluids are potential biomarkers for the diagnosis and assessment of urological diseases such as benign prostatic hyperplasia (BPH) and prostate cancer (PCa). The aim of the study was to identify and validate urinary cell-free miRNAs that can segregate patients with PCa from those with BPH.

Methods: In total, 1,052 urine, 150 serum, and 150 prostate tissue samples from patients with PCa or BPH were used in the study.

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Article Synopsis
  • Infections and inflammation in the prostate are crucial to the development of prostate cancer (CaP), with S100A8 and S100A9 being important factors in inflammation.
  • A study compared S100A8/A9 expression in tissues from prostate cancer patients versus those with benign prostatic hyperplasia (BPH) and analyzed urinary nucleic acid levels as potential biomarkers.
  • Results showed lower S100A8/A9 levels in CaP compared to BPH, with higher expression linked to worse prognosis, indicating that S100A8/A9 could serve as valuable diagnostic and prognostic indicators in prostate cancer.
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Background: The anticancer effects of selenium may be mediated by selenium-binding proteins, such as SELENBP1. The association between SELENBP1 expression levels and clinicopathologic parameters was assessed in renal cell carcinoma (RCC).

Methods: SELENBP1 mRNA expression was measured with real-time quantitative polymerase chain reaction (qPCR) in 139 specimens of primary RCC and 59 specimens of donor-matched normal-appearing kidney tissues.

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We performed gene expression profiling in bladder cancer patients to identify cancer-specific survival-related genes in muscle invasive bladder cancer (MIBC) patients. Sixty-two patients with MIBC were selected as the original cohort and another 118 MIBC patients were chosen as a validation cohort. The expression of USP18, DGCR2, and ZNF699 genes were measured and we analyzed the association between gene signatures and survival.

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Rectangular ceria particles were synthesized using the flash creation method. The influence of the morphology of ceria particles and the surfactant concentration on the removal rate was systematically investigated. These ceria slurries with polymeric surfactant molecules as the passivation agents of Si3N4 film, shows an exceptional non-Prestonian behaviors.

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Article Synopsis
  • * Analysis showed that SiO2 is more hydrophilic than poly Si, primarily due to the siloxane bonds present on the SiO2 surface.
  • * PAM adsorbs onto SiO2 through interactions between its amine groups and siloxane bonds, forming a protective layer that significantly reduces the removal rate of the SiO2 film during CMP, decreasing it from 82 to 12 A/min.
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The effect of the crystalline structures of nano-sized ceria particles on shallow trench isolation (STI) chemical mechanical planarization (CMP) performance was investigated. The ceria particles were synthesized via a solid-state displacement reaction method, and their crystalline structure was controlled by regulating the oxygen partial pressure at the reaction site on the precursor. The crystalline structures of ceria particles were analyzed by the high-resolution TEM nano-beam diffraction pattern.

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