Domesticated rice alters the rhizosphere microbiome, reducing nitrogen fixation and increasing nitrous oxide emissions.

Crop domestication has revolutionized food production but increased agriculture's reliance on fertilizers and pesticides. We investigate differences in the rhizosphere microbiome functions of wild and domesticated rice, focusing on nitrogen (N) cycling genes. Shotgun metagenomics and real-time PCR reveal a higher abundance of N-fixing genes in the wild rice rhizosphere microbiomes.

Purification of harvested rainwater using gravity-driven ceramic membrane: A visualization study combining Micro-CT and COMSOL simulations.

Rainwater harvesting is a viable solution for providing clean water in regions where conventional water sources are scarce or contaminated. However, the harvested rainwater often contains microorganisms, suspended particles, and other impurities that must be removed before consumption. Gravity-driven ceramic membranes (GDCMs) are an efficient choice for purifying harvested rainwater due to their energy-saving properties.

QuIP: 2-Bit Quantization of Large Language Models With Guarantees.

This work studies post-training parameter quantization in large language models (LLMs). We introduce quantization with incoherence processing (QuIP), a new method based on the insight that quantization benefits from weight and Hessian matrices, i.e.

Integrated transcriptomic and metabolomic analysis provides insight into the pollen development of CMS-D1 rice.

Background: Cytoplasmic male sterility (CMS) has greatly improved the utilization of heterosis in crops due to the absence of functional male gametophyte. The newly developed sporophytic D1 type CMS (CMS-D1) rice exhibits unique characteristics compared to the well-known sporophytic CMS-WA line, making it a valuable resource for rice breeding.

Results: In this research, a novel CMS-D1 line named Xingye A (XYA) was established, characterized by small, transparent, and shriveled anthers.

DNAL7, a new allele of NAL11, has major pleiotropic effects on rice architecture.

dnal7, a novel allelic variant of the OsHSP40, affects rice plant architecture and grain yield by coordinating auxins, cytokinins, and gibberellic acids. Plant height and leaf morphology are the most important traits of the ideal plant architecture (IPA), and discovering related genes is critical for breeding high-yield rice. Here, a dwarf and narrow leaf 7 (dnal7) mutant was identified from a γ-ray treated mutant population, which exhibits pleiotropic effects, including dwarfing, narrow leaves, small seeds, and low grain yield per plant compared to the wild type (WT).

The harm of residual plastic film and its accumulation driving factors in northwest China.

The background to this research is stark and rather troubling: the ongoing accumulation of residual plastic film (RPF) in farmland ultimately threatens the sustainable development of agriculture and food security. In this study, we selected 15 counties in northern China to analyze the effect of RPF content on soil properties and crop yield and the driving factors through sampling and survey questionnaire. The linear mixed-effects model revealed the four main factors affecting RPF content, ranked as follows: plastic film mulching years > government recycling policy > spacing between rows > recycling methods (0.

Development of InDel markers for Oryza sativa ssp. javanica based on whole-genome resequencing.

Oryza sativa ssp. javanica rice varieties exhibit a wide variation in the phenotypes of several important agronomic traits, including grain quality, grain shape, plant architecture, disease resistance, and high adaption to an unfavorable environment, indicating a great potential for rice improvement. DNA molecular markers are basic and critical tools in genetic analysis and gene mining.

Whole Genome Resequencing of 20 Accessions of Rice Landraces Reveals Javanica Genomic Structure Variation and Allelic Genotypes of a Grain Weight Gene TGW2.

The landraces preserved by indigenous worldwide exhibited larger variation in the phenotypes and adaption to different environments, which suggests that they comprise rich resources and can be served as a gene pool for rice improvement. Despite extensive studies on cultivated rice, the variations and relationships between landraces and modern cultivated rice remain unclear. In this study, a total of 20 varieties that include 10 javanica collected from different countries worldwide and 10 indica from China were genotyped and yielded a sum of 99.

Natural variation of HTH5 from wild rice, Oryza rufipogon Griff., is involved in conferring high-temperature tolerance at the heading stage.

Global warming is a major abiotic stress factor, which limit rice production. Exploiting the genetic basis of the natural variation in heat resistance at different reproductive stages among diverse exotic Oryza germplasms can help breeding heat-resistant rice cultivars. Here, we identified a stable quantitative trait locus (QTL) for heat tolerance at the heading stage on chromosome 5 (qHTH5) in O.

Layer-by-layer assembly of nanocomposite interlayers on a kaolin substrate for enhancing membrane performance of Pb(II) and Cd(II) removal.

Developing an ultra-thin polyamide selective layer with sufficient mechanical robustness on a highly porous ceramic substrate is challenging for removing heavy metal ions from wastewater. We synthesized a reliable ceramic-polyamide membrane by assembling nanocomposite interlayers of alumina and carbon black on the kaolin substrate. The surface morphology, pore size distribution, and roughness of ceramic substrates were improved by introducing the nanocomposite interlayer.

Comparison of methane metabolism in the rhizomicrobiomes of wild and related cultivated rice accessions reveals a strong impact of crop domestication.

Microbial communities from rhizosphere (rhizomicrobiomes) have been significantly impacted by domestication as evidenced by a comparison of the rhizomicrobiomes of wild and related cultivated rice accessions. While there have been many published studies focusing on the structure of the rhizomicrobiome, studies comparing the functional traits of the microbial communities in the rhizospheres of wild rice and cultivated rice accessions are not yet available. In this study, we used metagenomic data from experimental rice plots to analyze the potential functional traits of the microbial communities in the rhizospheres of wild rice accessions originated from Africa and Asia in comparison with their related cultivated rice accessions.

Strategies and Structure Feature of the Aboveground and Belowground Microbial Community Respond to Drought in Wild Rice (Oryza longistaminata).

Background: Drought is global environmental stress that limits crop yields. Plant-associated microbiomes play a crucial role in determining plant fitness in response to drought, yet the fundamental mechanisms for maintaining microbial community stability under drought disturbances in wild rice are poorly understood. We make explicit comparisons of leaf, stem, root and rhizosphere microbiomes from the drought-tolerant wild rice (Oryza longistaminata) in response to drought stress.

Heavy metal ions and particulate pollutants can be effectively removed by a gravity-driven ceramic foam filter optimized by carbon nanotube implantation.

It is of great significance to develop a new gravity-driven filter to remove water pollutants, but it is still challenging. Here, a novel and simple strategy is demonstrated to manufacture fly ash (FA) ceramic foams showing a three-dimensional interconnected porous structure, with multiwalled carbon nanotubes (MWCNTs) implanted by combining carbamate grafting and polydimethylsiloxane coating. The polydimethylsiloxane formed a physical coating on the carbamate group, generating an effective thermal insulating layer on the outer side of the entire MWCNT.

Comparison of wild rice (Oryza longistaminata) tissues identifies rhizome-specific bacterial and archaeal endophytic microbiomes communities and network structures.

Compared with root-associated habitats, little is known about the role of microbiota inside other rice organs, especially the rhizome of perennial wild rice, and this information may be of importance for agriculture. Oryza longistaminata is perennial wild rice with various agronomically valuable traits, including large biomass on poor soils, high nitrogen use efficiency, and resistance to insect pests and disease. Here, we compared the endophytic bacterial and archaeal communities and network structures of the rhizome to other compartments of O.

An effective method for improving the permeation flux of a ceramic membrane: Single-matrix spherical ceramic membrane.

A single-matrix hydrophobic ceramic membrane (HCM) was prepared via gel-casting and membrane grafting. Fly ash cenospheres and 1H,1H,2H,2H-perfluorooctyl trichlorosilane were used as the single-matrix material. The results showed that when the sintering temperature was 1300℃, the porosity was 75.

Effects of external Mn activities on OsNRAMP5 expression level and Cd accumulation in indica rice.

Manganese (Mn) transporter OsNRAMP5 was widely reported to regulate cadmium (Cd) uptake in rice. However, the relationship between OsNRAMP5 expression level and Cd accumulation, impacts of external ion activities on OsNRAMP5 expression level and Cd accumulation are still unclear. Investigations of the relationship between OsNRAMP5 expression level and Cd accumulation in three indica rice genotypes were conducted under various external Mn activities ranging from Mn deficiency to toxicity in EGTA-buffered nutrient solution.

Fine mapping of the qHTB1-1QTL, which confers heat tolerance at the booting stage, using an Oryza rufipogon Griff. introgression line.

The qHTB1-1 QTL, controlling heat tolerance at the booting stage in rice, was fine mapped to a 47.1 kb region containing eight candidate genes. Two positional candidate genes showed significant changes in expression levels under heat stress.

A -3 Fatty Acid Desaturase Gene, Enhances Cold Tolerance and Seed Germination Rate under Low Temperature in Rice.

Low temperature is an environmental stress factor that is always been applied in research on improving crop growth, productivity, and quality of crops. Polyunsaturated fatty acids (PUFAs) play an important role in cold tolerance, so its genetic manipulation of the PUFA contents in crops has led to the modification of cold sensitivity. In this study, we over-expressed an fatty acid desaturase from () drove by a maize ubiquitin promoter in rice.

Mechanisms and uncertainties of Zn supply on regulating rice Cd uptake.

Application of Zinc (Zn) is considered an effective measure to reduce Cadmium (Cd) uptake and toxicity in Cd-contaminated soils for many plant species. However, interaction between Zn and Cd in rice plant is complex and uncertain. In this study, four indica rice cultivars were selected to evaluate the effect of Zn exposure in an EGTA-buffered nutrient solution under varying Zn activities and a field level of Cd activity to characterize the interaction between Zn and Cd in rice.

Study on Permeability Stability of Sand-Based Microporous Ceramic Filter Membrane.

The instability of diafiltration is a widespread problem in the practical application of microporous ceramic filtration membranes. In this paper, a series of microporous ceramic filter membranes were prepared using inexpensive standard sand and river sand as matrix materials. Semi-empirical formula for the effective permeability radius of ceramic membranes with respect to time was established from analysis of the response mechanism between water flow and material properties.

Over-expression of a protein disulfide isomerase gene from Methanothermobacter thermautotrophicus, enhances heat stress tolerance in rice.

High temperature (HT) stress is a major environmental stress that limits agricultural production worldwide. Discovery and application of genes promoting high temperature tolerance is essential to enhance crop tolerance to heat stress. Proteins associated with chaperone and protein folding plays an important role in the high temperature stress response of plants.

The E3 Ubiquitin Ligase HAF1 Modulates Circadian Accumulation of EARLY FLOWERING3 to Control Heading Date in Rice under Long-Day Conditions.

The ubiquitin 26S proteasome system (UPS) is critical for enabling plants to alter their proteomes to integrate internal and external signals for the photoperiodic induction of flowering. We previously demonstrated that HAF1, a C3HC4 RING domain-containing E3 ubiquitin ligase, is essential to precisely modulate the timing of Heading Date1 accumulation and to ensure appropriate photoperiodic responses under short-day conditions in rice (). However, how HAF1 mediates flowering under long-day conditions remains unknown.

The chimeric mitochondrial gene orf182 causes non-pollen-type abortion in Dongxiang cytoplasmic male-sterile rice.

D1-cytoplasmic male sterility (CMS) rice is a sporophytic cytoplasmic male-sterile rice developed from Dongxiang wild rice that exhibits a no-pollen-grain phenotype. A mitochondrial chimeric gene (orf182) was detected by mitochondrial genome sequencing and a comparative analysis. Orf182 is composed of three recombinant fragments, the largest of which is homologous to Sorghum bicolor mitochondrial sequences.