Publications by authors named "Yanling Qi"

Terrestrial geothermal springs, reminiscent of early Earth conditions, host diverse and abundant populations of Archaea. In this study, we reconstructed 2,949 metagenome-assembled genomes (MAGs) from 152 metagenomes collected over six years from 48 geothermal springs in Tengchong, China. Among these MAGs, 1,431 (49%) were classified as high-quality, while 1,518 (51%) were considered as medium-quality.

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  • Redox cycling of iron is crucial for nutrient acquisition by organisms and the geochemical cycling of elements in aquatic environments, involving both microbial activity and abiotic processes.
  • A study reveals that a specific phototrophic species, SW2, can reduce Fe(III) during bacterial growth and is connected to an electron transport system through a -type cytochrome.
  • The findings suggest that iron redox transformation by anoxygenic photoferrotrophs occurs globally in both modern and ancient environments, thus highlighting their significant role in iron cycling.
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Grass carp reovirus (GCRV) belongs to the genus Aquareovirus and is responsible for causing serious hemorrhagic disease in grass carp (Ctenopharyngodon idella), characterized by high mortality rates. Numerous animal viruses have been shown to activate endoplasmic reticulum stress (ERS). However, the potential for GCRV infection to induce ERS and its implications for viral infection remain unclear.

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  • The study investigates the prevalence of depressive symptoms among middle-aged and older Chinese adults during the COVID-19 pandemic and the role of social media in this context.
  • Data from the China Health and Retirement Longitudinal Study was analyzed, finding that 36% of participants reported depressive symptoms in 2020, with higher rates among women, rural residents, and those from western provinces.
  • The research showed that engaging in social media activities could significantly lower the risk of developing depressive symptoms and help those already experiencing depression to recover.
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  • Viral circRNAs, like circ_20 from the grass carp reovirus (GCRV), are shown to play crucial roles in regulating viral replication and host interactions.
  • The study found that circ_20 negatively impacts processes like endoplasmic reticulum stress (ERS), the PERK pathway, and reactive oxygen species (ROS) production in GCRV-infected cells.
  • circ_20 inhibits GCRV replication by forming a complex with BIP and PERK, and specific regions of circ_20 are critical for these interactions; disrupting them reduces the effectiveness of circ_20 in controlling GCRV proliferation.
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Cyanobacteriota, the sole prokaryotes capable of oxygenic photosynthesis (OxyP), occupy a unique and pivotal role in Earth's history. While the notion that OxyP may have originated from Cyanobacteriota is widely accepted, its early evolution remains elusive. Here, by using both metagenomics and metatranscriptomics, we explore 36 metagenome-assembled genomes from hot spring ecosystems, belonging to two deep-branching cyanobacterial orders: Thermostichales and Gloeomargaritales.

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  • Terrestrial geothermal springs are important environments that host diverse populations of Archaea, but their diversity and functionalities are not fully understood.
  • A study analyzed 152 metagenomes from 48 geothermal springs in Tengchong, China, uncovering 2949 archaeal genomes and 392 new species, increasing known Archaea diversity by ~48.6%.
  • The research highlights how temperature and pH influence archaeal communities and potential ecological roles in important biogeochemical cycles, revealing both competitive and cooperative interactions among Archaea.
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  • Ammonia-oxidizing Nitrososphaeria are key microorganisms that influence carbon and nitrogen cycles but non-AOA variants are less understood due to limited genetic data.
  • Researchers reconstructed 128 genomes from varied environments to show that these non-AOA are functionally diverse, capable of processes like carbon fixation and anaerobic respiration.
  • The study suggests that Nitrososphaeria evolved from an aerobic ancestor and that their functional diversity is largely influenced by environmental factors such as oxygen, pH, and temperature.
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" Parvarchaeales" microbes, representing a DPANN archaeal group with limited metabolic potential and reliance on hosts for their growth, were initially found in acid mine drainage (AMD). Due to the lack of representatives, however, their ecological roles and adaptation to extreme habitats such as AMD as well as how they diverge across the lineage remain largely unexplored. By applying genome-resolved metagenomics, 28 Parvarchaeales-associated metagenome-assembled genomes (MAGs) representing two orders and five genera were recovered.

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Antibiotic resistance has emerged as a significant issue to be resolved around the world. Bacteriophage (phage), in contrast to antibiotics, can only kill the target bacteria with no adverse effect on the normal bacterial flora. In this review, we described the biological characteristics of phage, and summarized the phage application in China, including in mammals, ovipara, aquatilia, and human clinical treatment.

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The biology of Korarchaeia remains elusive due to the lack of genome representatives. Here, we reconstruct 10 closely related metagenome-assembled genomes from hot spring habitats and place them into a single species, proposed herein as Panguiarchaeum symbiosum. Functional investigation suggests that Panguiarchaeum symbiosum is strictly anaerobic and grows exclusively in thermal habitats by fermenting peptides coupled with sulfide and hydrogen production to dispose of electrons.

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Investigation of Cu(II) and Se(IV) electrochemical reduction processes in solutions with poly(ethylene glycol) (PEG) provides important theoretical guidance for the preparation of Cu-Se alloy films with stronger thermoelectric properties. The results reveal that PEG adsorbing on the electrode surface does not affect the electrochemical reduction mechanism of Cu(II), Se(IV), and Cu(II)-Se(IV), but inhibits the electrochemical reduction rates. The surface morphology and composition change with a negative shift in the deposition potentials.

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Phage therapy is an alternative approach to overcome the problem of multidrug resistance in bacteria. In this study, a bacteriophage named PZL-Ah152, which infects , was isolated from sewage, and its biological characteristics and genome were studied. The genome contained 54 putative coding sequences and lacked known putative virulence factors, so it could be applied to phage therapy.

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Aeromonas hydrophila (A. hydrophila) is an opportunistic pathogen of fish, humans, and livestock, and has a severe negative impact on aquaculture development. Phage therapy is considered an alternative strategy for controlling bacterial infections and contamination.

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Aeromonas hydrophila (A. hydrophila) is an opportunistic pathogen of fish-human-livestock, which poses a threat to the development of aquaculture. Lytic phage has long been considered as an effective bactericidal agent.

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Aeromonas veronii (A. veronii) is an opportunistic pathogen of fish-human-livestock, which poses a threat to the development of aquaculture. Based on our previous studies on proteomics and genomics, we found out that the aodp gene may be related to the virulence of A.

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" Aenigmarchaeota" (" Aenigmarchaeota") represents one of the earliest proposed evolutionary branches within the , , , , and (DPANN) superphylum. However, their ecological roles and potential host-symbiont interactions are still poorly understood. Here, eight metagenome-assembled genomes (MAGs) were reconstructed from hot spring ecosystems, and further in-depth comparative and evolutionary genomic analyses were conducted on these MAGs and other genomes downloaded from public databases.

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Article Synopsis
  • - The study focuses on
  • Bathyarchaeia
  • , a diverse group of microorganisms found mainly in anoxic submarine sediments, examining its evolution and ecological roles in hot spring sediments from Tibet and Yunnan, China.
  • - Researchers recovered
  • 35 metagenome-assembled genomes (MAGs)
  • of Bathyarchaeia, discovering 4 new families and categorizing them into 7 orders and 15 families, significantly increasing the known diversity of this group.
  • - Comparative genomic analyses suggest that Bathyarchaeia from thermal habitats possess genes for
  • carbohydrate degradation
  • , indicating adaptations to high temperatures and potential roles in methanogenesis, showcasing their unique metabolic abilities compared to their marine counterparts.
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The ordinary intrinsic activity and disordered distribution of metal sites in zero/one-dimensional (0D/1D) single-atom catalysts (SACs) lead to inferior catalytic efficiency and short-term endurance in the oxygen reduction reaction (ORR), which restricts the large-scale application of hydrogen-oxygen fuel cells and metal-air batteries. To improve the activity of SACs, a mild synthesis method was chosen to conjugate 1D Fe SACs with 2D graphene film (Fe SAC@G) that realized a composite structure with well-ordered atomic-Fe coordination configuration. The product exhibits outstanding ORR electrocatalytic efficiency and stability in 0.

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Background: Associations between the frequency of social and intellectual activities and cognitive trajectories are understudied in Chinese middle-aged and older adults. We aimed to examine this association in a nationally representative longitudinal study.

Methods: The China Health and Retirement Longitudinal Study (CHARLS) is a nationally representative sample of Chinese middle-aged and older participants.

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Importance: Evidence of whether severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the virus that causes coronavirus disease 2019 (COVID-19), can be transmitted as an aerosol (ie, airborne) has substantial public health implications.

Objective: To investigate potential transmission routes of SARS-CoV-2 infection with epidemiologic evidence from a COVID-19 outbreak.

Design, Setting, And Participants: This cohort study examined a community COVID-19 outbreak in Zhejiang province.

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Importance: Studies examining the association of low to moderate drinking with various cognitive functions have yielded mixed findings.

Objective: To investigate whether associations exist between low to moderate alcohol drinking and cognitive function trajectories or rates of change in cognitive function from middle age to older age among US adults.

Design, Setting, And Participants: A prospective cohort study of participants drawn from the Health and Retirement Study (HRS), a nationally representative sample of US adults, with mean (SD) follow-up of 9.

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We aimed to evaluate the association of altitudes with the prevalence of hypertension among residents aged 15 years and above in Tibet, China. Data for 11,407 Tibetan residents from the National Health Services Survey in 2013 were analyzed. Association between altitudes and prevalence of physician-diagnosed hypertension was assessed by two logistic regression models as follows: (i) a base model adjusted for age and gender, and (ii) a full model additionally adjusted for body mass index, education, marital status, area of residence, distance to the nearest medical institute, smoking, drinking, and exercise.

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Studies on leptin and blood pressure (BP) associations have yielded inconsistent findings. The current study aimed to evaluate the effect of genetically determined leptin on BP and to explore whether smoking status modified this effect. We conducted a Mendelian randomization analysis using the baseline data of 3860 participants in the Framingham Heart Study 3rd generation cohort.

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