Publications by authors named "Yan Min Ren"

L-amino acids represent the most common amino acid form, most notably as protein residues, whereas D-amino acids, despite their rare occurrence, play significant roles in many biological processes. Amino acid racemases are enzymes that catalyze the interconversion of L- and/or D-amino acids. McyF is a pyridoxal 5'-phosphate (PLP) independent amino acid racemase that produces the substrate D-aspartate for the biosynthesis of microcystin in the cyanobacterium Microcystis aeruginosa PCC7806.

View Article and Find Full Text PDF
Article Synopsis
  • The study focuses on the role of the transcription factor HetR and the PatS peptide in regulating the formation of heterocysts in the cyanobacterium Anabaena sp. PCC 7120.
  • Researchers determined the structures of HetR binding to DNA and HetRHood binding to a PatS-derived hexapeptide, revealing unique features in their configurations.
  • The findings illustrate how the binding of PatS6 induces conformational changes in HetR, which ultimately leads to its release from the DNA, contributing to our understanding of spatial patterning in prokaryotes.
View Article and Find Full Text PDF

Microcystins, which are the most common cause of hepatotoxicity associated with cyanobacterial water blooms, are assembled in vivo on a large multienzyme complex via a mixed nonribosomal peptide synthetase/polyketide synthetase (NRPS/PKS). The biosynthesis of microcystin in Microcystis aeruginosa PCC 7806 starts with the enzyme McyG, which contains an adenylation-peptidyl carrier protein (A-PCP) didomain for loading the starter unit to assemble the side chain of an Adda residue. However, the catalytic mechanism remains unclear.

View Article and Find Full Text PDF

Gas vesicles are gas-filled proteinaceous organelles that provide buoyancy for bacteria and archaea. A gene cluster that is highly conserved in various species encodes about 8-14 proteins (Gvp proteins) that are involved in the formation of gas vesicles. Here, the first crystal structure of the gas vesicle protein GvpF from Microcystis aeruginosa PCC 7806 is reported at 2.

View Article and Find Full Text PDF

Saccharomyces cerevisiae Coq5 is an S-adenosyl methionine (SAM)-dependent methyltransferase (SAM-MTase) that catalyzes the only C-methylation step in the coenzyme Q (CoQ) biosynthesis pathway, in which 2-methoxy-6-polyprenyl-1,4-benzoquinone (DDMQH2) is converted to 2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone (DMQH2). Crystal structures of Coq5 were determined in the apo form (Coq5-apo) at 2.2 Å resolution and in the SAM-bound form (Coq5-SAM) at 2.

View Article and Find Full Text PDF

Protein glycosylation catalyzed by the O-GlcNAc transferase (OGT) plays a critical role in various biological processes. In Streptococcus pneumoniae, the core enzyme GtfA and co-activator GtfB form an OGT complex to glycosylate the serine-rich repeat (SRR) of adhesin PsrP (pneumococcal serine-rich repeat protein), which is involved in the infection and pathogenesis. Here we report the 2.

View Article and Find Full Text PDF

Staphylococcus aureus, a Gram-positive bacterium causes a number of devastating human diseases, such as infective endocarditis, osteomyelitis, septic arthritis and sepsis. S. aureus SraP, a surface-exposed serine-rich repeat glycoprotein (SRRP), is required for the pathogenesis of human infective endocarditis via its ligand-binding region (BR) adhering to human platelets.

View Article and Find Full Text PDF
Article Synopsis
  • The green supply chain trends are driven by environmental pressures and customer demands, requiring the construction industry to assess its competitive advantage through proper tools.
  • The study introduces a comprehensive assessment model for contractors' green innovation, combining methodologies like system dynamics, AHP, utility theory, and fuzzy logic to evaluate intrinsic and extrinsic factors.
  • This model aids government evaluations of green contractors in public projects and helps contractors gauge their competitiveness and foster further green innovations.
View Article and Find Full Text PDF

Saccharomyces cerevisiae Abz2 is a pyridoxal 5'-phosphate (PLP)-dependent lyase that converts 4-amino-4-deoxychorismate (ADC) to para-aminobenzoate and pyruvate. To investigate the catalytic mechanism, we determined the 1.9 Å resolution crystal structure of Abz2 complexed with PLP, representing the first eukaryotic ADC lyase structure.

View Article and Find Full Text PDF