Publications by authors named "Ya-Xi Liu"

Deoxynivalenol (DON) is a secondary metabolite of Fusarium fungi and belonged to trichothecenes, and it widely presents in various food commodities. Previous studies have highlighted its potent toxicity, adversely affecting the growth, development, and reproductive in both humans and animals. However, the potential impact of DON on porcine oocyte organelles remains elusive.

View Article and Find Full Text PDF
Article Synopsis
  • * The study found that lower AMPK levels during oocyte aging lead to defects in maturation and increased oxidative stress, impacting organelle function like mitochondria and the endoplasmic reticulum.
  • * Overall, AMPK helps reduce oxidative stress in oocytes by regulating various organelles, which is vital for proper meiotic maturation.
View Article and Find Full Text PDF
Article Synopsis
  • * Inhibition of NAMPT disrupts cumulus expansion and polar body extrusion, indicating its crucial role in oocyte development.
  • * Deficiency in NAMPT leads to mitochondrial dysfunction, issues with chromosome organization, and an imbalance in lipid metabolism, ultimately impairing oocyte maturation.
View Article and Find Full Text PDF
Article Synopsis
  • Stripe rust is a significant fungal disease affecting wheat globally, caused by a specific pathogen, and was studied using 152 wheat landraces from China to find resistance loci.
  • The research identified 51 loci linked to adult-plant resistance to stripe rust, including 19 accessions that showed high resistance in field conditions across multiple environments.
  • Among the identified loci, 20 were categorized as potentially novel QTL that could enhance understanding of genetic resistance and support breeding efforts for better stripe rust resistance in wheat.
View Article and Find Full Text PDF

We evaluated the SGP-1 protein composition of 368 Chinese wheat landraces using SDS-PAGE. The SGP-D1 null type was identified in three accessions (Xiaoqingmang, Pushanbamai, and P119). An 18-bp deletion and 9-bp variation were found at the junction region of the 7th intron and 8th exon, leading to deletion of the intron-exon junction recognition site AG when aligned the 8261-bp DNA sequence of TaSSIIa-D in Pushanbamai with that of Chinese Spring.

View Article and Find Full Text PDF

As a primitive hexaploid wheat resource distributed only in Tibet, Tibetan semi-wild wheat (Triticum aestivum subsp. tibetanum Shao) possesses unique characteristics that could be exploited in wheat breeding programs. Its good root system could offer a stable platform for above-ground components.

View Article and Find Full Text PDF
Article Synopsis
  • Pre-harvest sprouting (PHS) in wheat causes significant economic loss in high rainfall areas, and a study evaluated 717 Chinese landraces for PHS resistance using extensive genetic analysis techniques.
  • The results showed that many landraces, especially white-grained ones, had better resistance to PHS, with geographical variations indicating higher resistance in southern China compared to northern regions.
  • Three key genetic regions related to PHS resistance were identified, along with additional factors linked to grain color, suggesting a combination of natural and human selection contributed to enhancing PHS resistance in these wheat varieties.
View Article and Find Full Text PDF

A novel Wx-B1 allele was characterized; a transposon insertion resulted in the loss of its function, which is different from the previously reported gene silencing mechanisms at the Wx-B1 locus. The waxy protein composition of 53 Chinese wheat landraces was analyzed using sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and two-dimensional gel electrophoresis; of these, 10 did not show the expression of Wx-A1 (four accession) or Wx-B1 (six accessions) protein. The results of molecular marker detection revealed that the Wx-B1 allele (Wx-B1n) showed normal expression, inconsistent with the findings of SDS-PAGE for the Xiaobaipi accession.

View Article and Find Full Text PDF

Phosphoglucan phosphatases (Like-SEX4 1 and 2; LSF1 and LSF2) were reported to play roles in starch metabolism in leaves of Arabidopsis. In this study, we identified and mapped the LSF1 and LSF2 genes in barley (HvLSF1 and HvLSF2), characterized their gene and protein structures, predicted the cis-elements of their promoters, and analysed their expression patterns. HvLSF1 and HvLSF2 were mapped on the long arm of chromosome 1H (1HL) and 5H (5HL), respectively.

View Article and Find Full Text PDF

Chromosome translocation is an important driving force in shaping genomes during evolution. Detailed knowledge of chromosome translocations in a given species and its close relatives should increase the efficiency and precision of chromosome engineering in crop improvement. To identify genes flanking the breakpoints of translocations and inversions as a step toward identifying breakpoints in bread wheat, we systematically analysed genes in the Brachypodium genome against wheat survey sequences and bin-mapped ESTs (expressed sequence tags) derived from the hexaploid wheat genotype 'Chinese Spring'.

View Article and Find Full Text PDF

Background: Bread wheat (Triticum aestivum L., 2n = 6x = 42) is an allohexaploid with a huge genome. Due to the presence of extensive homoeologs and paralogs, generating locus-specific sequences can be challenging, especially when a large number of sequences are required.

View Article and Find Full Text PDF
Article Synopsis
  • The study isolates and characterizes a WOX2 homolog gene from Aegilops tauschii, a key contributor to the D genome of wheat.
  • This gene has a 2045 bp sequence with an open reading frame that encodes a protein of 322 amino acids, featuring a conserved homeodomain and WUS-box domain.
  • The research indicates that the WOX2 gene is primarily expressed in seeds during development, suggesting its crucial role in embryo development in Aegilops tauschii.
View Article and Find Full Text PDF
Article Synopsis
  • * Researchers identified 2,407 transcription factors (TFs) in the wheat genome, classifying them into 63 families, representing about 2.22% of all wheat genes, which is lower than other cereal crops.
  • * The study highlighted specific expression patterns of TFs related to various developmental stages and tissues, and established a comprehensive database called WheatTFDB to compile this information.
View Article and Find Full Text PDF
Article Synopsis
  • Tibetan semi-wild wheat, found only on the Qinghai-Tibet Plateau, exhibits unique characteristics such as brittle rachis and hard threshing, which are important for its growth.
  • Researchers constructed a whole-genome linkage map using a population of 186 recombinant inbred lines and identified several Quantitative Trait Loci (QTLs) related to brittle rachis and threshability, revealing both pleiotropic effects and independent genetic influences.
  • Significant genetic loci were discovered, particularly on chromosomes 2DS and 3DS, which contribute to understanding the traits of Tibetan semi-wild wheat and suggest its unique evolutionary path compared to common wheat.
View Article and Find Full Text PDF
Article Synopsis
  • Numerous studies have explored the molecular mechanisms behind shrunken endosperm mutants in barley, but clarity on eight specific seg mutants (seg1-seg8) and certain sex mutants is still lacking.
  • This research analyzed amylose content, starch-synthesis gene expression, granule-binding proteins, and granule structure in both normal and shrunken endosperm barley accessions, revealing significant differences in properties like amylose levels and protein presence.
  • Findings included distinct expression patterns of waxy alleles and variations in starch granule characteristics, contributing to a deeper understanding of how these mutants affect starch biosynthesis and grain development.
View Article and Find Full Text PDF
Article Synopsis
  • - A synthetic doubled-haploid wheat population named SynDH1 was created from the hybridization of specific wheat lines, leading to the generation of a genetic map with 606 markers.
  • - Out of these, 588 markers were successfully organized into linkage groups across 14 chromosomes, revealing a mean distance of 3.48 cm between markers, though some chromosome regions showed gaps in coverage.
  • - This genetic map was instrumental in identifying five quantitative trait loci (QTL) related to wheat traits like spikelet number and grain weight, although some segregation distortion regions were noted, indicating more markers are necessary for improved map density.
View Article and Find Full Text PDF

Background: High molecular weight glutenin subunits (HMW-GSs), encoded by the genes at Glu-1 loci in wheat and its related species, are significant in the determination of grain processing quality. However, the diversity and variations of HMW-GSs are relatively low in bread wheat. More interests are now focused on wheat wild relatives in Triticeae.

View Article and Find Full Text PDF