Publications by authors named "Ya-Jie Xu"

EED (embryonic ectoderm development) is a core subunit of the polycomb repressive complex 2 (PRC2), which senses the trimethylation of histone H3 lysine 27 (H3K27). However, its biological function in cerebellar development remains unknown. Here, we show that EED deletion from neural stem cells (NSCs) or cerebellar granule cell progenitors (GCPs) leads to reduced GCPs proliferation, cell death, cerebellar hypoplasia, and motor deficits in mice.

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  • Increasing evidence suggests a link between gut microbiota and chronic kidney disease (CKD), but whether it's a causal relationship is still unclear.
  • Mendelian randomization (MR) was used to investigate this potential causal connection, analyzing genomic data from public databases focusing on gut microbiota and CKD.
  • The study found 10 microbiota types potentially increasing CKD risk and 5 types that could protect against it, indicating that further exploration of these gut microbes may offer new insights for preventing and monitoring CKD.
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Background: Large-for-gestational age (LGA), a marker of fetal overgrowth, has been linked to obesity in adulthood. Little is known about how infancy growth trajectories affect adiposity in early childhood in LGA.

Methods: In the Shanghai Birth Cohort, we followed up 259 LGA (birth weight >90th percentile) and 1673 appropriate-for-gestational age (AGA, 10th-90th percentiles) children on body composition (by InBody 770) at age 4 years.

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The ability of neural stem/progenitor cells (NSPCs) to proliferate and differentiate is required through different stages of neurogenesis. Disturbance in the regulation of neurogenesis causes many neurological diseases, such as intellectual disability, autism, and schizophrenia. However, the intrinsic mechanisms of this regulation in neurogenesis remain poorly understood.

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Aim: Adverse (poor or excessive) fetal growth "programs" an elevated risk of type 2 diabetes. Fatty acid binding protein 4 (FABP4) has been implicated in regulating insulin sensitivity and lipid metabolism relevant to fetal growth. We sought to determine whether FABP4 is associated with poor or excessive fetal growth and fetal lipids.

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Background And Objective: Gestational diabetes mellitus (GDM) "programs" an elevated risk of metabolic dysfunctional disorders in the offspring, and has been associated with elevated leptin and decreased adiponectin levels in cord blood. We sought to assess whether docosahexaenoic acid (DHA) supplementation in GDM affects neonatal metabolic health biomarkers especially leptin and adiponectin.

Methods: In a randomized controlled trial, singleton pregnant women with diagnosis of GDM at 24-28  weeks of gestation were randomized to dietary supplementation of 500 mg DHA per day (intervention,  = 30) until delivery or standard care (control,  = 38).

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  • Traumatic brain injury (TBI) leads to neuronal loss and cognitive issues, prompting interest in promoting neurogenesis as a potential treatment.
  • Transglutaminase 2 (TGM2) is found to be crucial for neurogenic processes, showing significant dysregulation post-TBI and possibly serving as a target for advancing neural regeneration.
  • Research using a conditional knockout mouse model demonstrated that TGM2 influences neural stem/progenitor cell proliferation, differentiation, and migration, making it a promising therapeutic target for enhancing neurogenesis in the hippocampus after TBI.
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  • - The study investigates how fetal overgrowth correlates with an increased risk of type 2 diabetes in adulthood, focusing on epigenetic changes, specifically DNA methylation in the placenta.
  • - Researchers discovered 543 positions of differential methylation in placental genes between large-for-gestational-age (LGA) and optimal-for-gestational-age (OGA) infants, with certain genes accounting for significant variations in birth weight.
  • - Validated findings highlight hypermethylation of genes VSX1 and CDH13 in LGA cases and show that while the adiponectin gene's methylation in placenta is linked to its levels in cord blood, leptin and fetal growth factors do not show such relationships.
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Background: Rett syndrome (RTT), mainly caused by mutations in methyl-CpG binding protein 2 (MECP2), is one of the most prevalent neurodevelopmental disorders in girls. However, the underlying mechanism of MECP2 remains largely unknown and currently there is no effective treatment available for RTT.

Methods: We generated MECP2-KO human embryonic stem cells (hESCs), and differentiated them into neurons and cerebral organoids to investigate phenotypes of MECP2 loss-of-function, potential therapeutic agents, and the underlying mechanism by transcriptome sequencing.

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  • Gestational diabetes mellitus (GDM) is linked to an increased risk of metabolic syndrome in offspring, potentially due to epigenetic changes, particularly in DNA methylation patterns in the placenta.
  • A study identified 256 differentially methylated positions (DMPs) in placental DNA between GDM and control groups, with specific genes like WSCD2 showing significant methylation changes.
  • Despite finding various hypermethylated and hypomethylated genes associated with GDM, no enriched biological pathways were identified, although some gene methylations correlated with fetal growth metrics.
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Fibroblast growth factor 19 (FGF19) has been implicated in glucose homeostasis. Gestational diabetes mellitus (GDM) enhances fetal insulin secretion and fetal growth. Girls weigh less and are more insulin resistant than boys at birth.

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Fatty acid binding protein 4 (FABP4) has been associated with insulin resistance. Gestational diabetes mellitus (GDM) impairs fetal insulin sensitivity. Female newborns are more insulin resistant than male newborns.

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Context: Fetal overgrowth "programs" an elevated risk of obesity and type 2 diabetes in adulthood. Plausibly, adipokines may be involved in programming metabolic health.

Objective: This work aimed to evaluate whether large-for-gestational-age (LGA), an indicator of fetal overgrowth, is associated with altered circulating leptin and adiponectin levels in infancy, and assess the determinants.

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Histone lysine crotonylation (Kcr), an evolutionarily conserved and widespread non-acetyl short-chain lysine acylation, plays important roles in transcriptional regulation and disease processes. However, the genome-wide distribution, dynamic changes, and associations with gene expression of histone Kcr during developmental processes are largely unknown. In this study, we find that histone Kcr is mainly located in active promoter regions, acts as an epigenetic hallmark of highly expressed genes, and regulates genes participating in metabolism and proliferation.

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  • 5-hydroxytryptamine receptor 5B (5-HT5B) is crucial for neurodevelopmental processes, and disruptions in its function are linked to cognitive deficits seen in Kabuki syndrome.
  • Disruption of this receptor in mouse models led to significant issues in neuronal activity and calcium balance, highlighting its role in brain function.
  • Overexpressing 5-HT5B in study models improved neuronal function and reversed anxiety-like behaviors and memory issues, suggesting it may be a therapeutic target for intellectual disabilities related to neurodevelopmental disorders.
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Circular RNA (circRNA) molecules contain microRNA (miRNA) response elements that are able to competitively bind miRNAs as well as function as miRNA sponges within cells, which can reduce miRNA inhibition of target genes, thereby increasing their expression. TargetScan and miRanda bioinformatic tools were used to analyze the binding sites between genes. The relative levels of gene expression in tissues and cells were verified using quantitative reverse transcription-polymerase chain reaction.

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High-throughput sequencing has facilitated the identification of many types of non-coding RNAs (ncRNAs) involved in diverse cellular processes. NcRNAs as epigenetic mediators play key roles in neuronal development, maintenance, and dysfunction by controlling gene expression at multiple levels. NcRNAs may not only target specific DNA or RNA for gene silence but may also directly interact with chromatin-modifying proteins like Polycomb group (PcG) proteins to drive orchestrated transcriptional programs.

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EED (embryonic ectoderm development) is a core component of the Polycomb repressive complex 2 (PRC2) which catalyzes the methylation of histone H3 lysine 27 (H3K27) during the process of self-renewal, proliferation, and differentiation of embryonic stem cells. However, its function in the mammalian nervous system remains unexplored. Here, we report that loss of EED in the brain leads to postnatal lethality, impaired neuronal differentiation, and malformation of the dentate gyrus.

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The present study aimed at testing the hypothesis that application of multiscale cross-approximate entropy (MCAE) analysis in the study of nonlinear coupling behavior of two synchronized time series of different natures [i.e., R-R interval (RRI) and crest time (CT, the time interval from foot to peakof a pulse wave)] could yield information on complexity related to diabetes-associated vascular changes.

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Neurons in the central nervous system (CNS) lose their intrinsic ability and fail to regenerate, but the underlying mechanisms are largely unknown. Polycomb group (PcG) proteins, which include PRC1 and PRC2 complexes function as gene repressors and are involved in many biological processes. Here we report that PRC1 components (polycomb chromobox (CBX) 2, 7, and 8) are novel regulators of axon growth and regeneration.

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The polycomb repressive complex 2 (PRC2) is responsible for catalyzing both di- and trimethylation of histone H3 at lysine 27 (H3K27me2/3). The subunits of PRC2 are widely expressed in the central nervous system (CNS). PRC2 as well as H3K27me2/3, play distinct roles in neuronal identity, proliferation and differentiation of neural stem/progenitor cells, neuronal morphology, and gliogenesis.

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Histone demethylase UTX mediates removal of repressive trimethylation of histone H3 lysine 27 (H3K27me3) to establish a mechanistic switch to activate large sets of genes. Mutation of has recently been shown to be associated with Kabuki syndrome, a rare congenital anomaly syndrome with dementia. However, its biological function in the brain is largely unknown.

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The polycomb repressive complexes 1 (PRC1) and 2 (PRC2) are two distinct polycomb group (PcG) proteins that maintain the stable silencing of specific sets of genes through chromatin modifications. Although the PRC2 component EZH2 has been known as an epigenetic regulator in promoting the proliferation of neural stem/progenitor cells (NSPCs), the regulatory network that controls this process remains largely unknown. Here we show that miR-203 is repressed by EZH2 in both embryonic and adult NSPCs.

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Objective: To investigate the effects of dexmedetomidine on renal microcirculatory perfusion in rabbits with renal ischemia/reperfusion (I/R) injury rabbit by quantitative analysis of contrast-enhanced ultrasound (CEUS).

Methods: Twenty- four New Zealand rabbits were randomly divided into 3 groups (8 in each), including a control group, renal I/R injury group and dexmedetomidine group. In the latter two groups, the right kidney of the rabbits was resected and I/R injury was induced in the left kidney.

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  • Fibrinogen plays a crucial role in blood coagulation and its accumulation in blood vessel walls is linked to atherosclerosis, but its relationship with reactive carbonyl compounds (RCCs) is not well understood.
  • The study found that glycolaldehyde and acrolein strongly inhibit fibrinogen activation and promote aggregation more than other RCCs like methylglyoxal, glyoxal, and malondialdehyde.
  • Glycolaldehyde notably delayed blood coagulation and significantly suppressed fibrinogenesis, indicating its potential as a key factor in the pathological processes related to fibrinogen deposition in the bloodstream.
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