Potential drivers of pocilloporid coral extirpations in Singapore.

The reason why four out of five historically recorded pocilloporid species in Singapore went extinct remains unclear. However, potential causes include urbanization-related stressors such as sedimentation and low light. In this study, we conducted two ex-situ experiments to examine the effects of light limitation and sediment load on the survival and health of two extirpated (Stylophora pistillata, and Seriatopora hystrix), one extant (Pocillopora acuta), and one regional (Pocillopora meandrina) pocilloporid species.

A deep-learning model for quantifying circulating tumour DNA from the density distribution of DNA-fragment lengths.

The quantification of circulating tumour DNA (ctDNA) in blood enables non-invasive surveillance of cancer progression. Here we show that a deep-learning model can accurately quantify ctDNA from the density distribution of cell-free DNA-fragment lengths. We validated the model, which we named 'Fragle', by using low-pass whole-genome-sequencing data from multiple cancer types and healthy control cohorts.

Differential regulation of BAX and BAK apoptotic activity revealed by small molecules.

Defective apoptosis mediated by B cell lymphoma 2 antagonist/killer (BAK) or B cell lymphoma 2-associated X protein (BAX) underlies various pathologies including autoimmune and degenerative conditions. On mitochondria, voltage-dependent anion channel 2 (VDAC2) interacts with BAK and BAX through a common interface to inhibit BAK or to facilitate BAX apoptotic activity. We identified a small molecule (WEHI-3773) that inhibits interaction between VDAC2 and BAK or BAX revealing contrasting effects on their apoptotic activity.

Normal embryo development needs MEIG1-mediated sperm formation.

Normal embryo development is a complex process that requires normal sperm to fertilize normal oocytes. Abnormal embryogenesis can be caused by either abnormal oocytes or abnormal sperm. However, the impact of sperm-associated factors is often underappreciated.

The Small Non-Coding RNA Profile of Human and Mouse Sperm.

Small non-coding RNAs constitute a dynamic epigenetic layer in mature spermatozoa that can exert transgenerational regulatory functions. Here, we review recent advances in the field of small RNAs in spermatozoa, how their profiles change in response to lifestyle or environmental factors, and their impact on offsprings' physiology. The profile of these RNAs changes dramatically during spermatozoa maturation.