Publications by authors named "XueLi Niu"

The skin, the largest organ of the human body, covers the body surface and serves as a crucial barrier for maintaining internal environmental stability. Various microorganisms such as bacteria, fungi, and viruses reside on the skin surface, and densely arranged keratinocytes exhibit inhibitory effects on pathogenic microorganisms. The skin is an essential barrier against pathogenic microbial infections, many of which manifest as skin lesions.

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Cadmium (Cd) contamination poses serious risks to soil ecosystems and human health. Herein, the effect of two drunken horse grasses (Achnatherum inebrians) including endophytes Epichloë gansuensis infected (E+ ) and uninfected (E-) on the phytoremediation of Cd-contaminated soils were analyzed by coupling high-throughput sequencing and soil metabolomics. The results showed that the high-risk soil Cd decreased and the medium- and low-risk Cd fraction increased to varying degrees after planting E+ and E- plants in the soil.

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Vetiver grass () has been widely used in recent years for ecological environment management, restoration of degraded ecosystems, and essential oil extraction. In 2019, a leaf streak disease of was observed in Zhanjiang, Guangdong Province, China. The disease appeared as large streak lesions on the leaves, on which conidiomata were formed.

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Antibody-drug conjugates (ADCs) are anticancer drugs that combine cytotoxic small-molecule drugs (payloads) with monoclonal antibodies through a chemical linker and that transfer toxic payloads to tumor cells expressing target antigens. All ADCs are based on human IgG. In 2009, the Food and Drug Administration (FDA) approved gemtuzumab ozogamicin as the initial first-generation ADC.

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  • Local hyperthermia at 44°C can effectively treat HPV-infected skin lesions, but about 30% of patients don’t respond well, prompting research into improving this treatment.
  • To explore molecular targets for enhancing antiviral immunity, researchers performed a lysine succinylome assay on HaCaT cells exposed to different temperatures, validating their findings through various biochemical techniques.
  • The study identified 119 proteins with increased succinylation at higher temperatures, highlighting annexin A2 as a potential new drug target, which combined with local hyperthermia may lead to better treatment outcomes for warts.
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  • Microorganisms play a significant role in skin diseases, with their imbalances or external infections contributing to various conditions, and understanding their composition can improve diagnosis and prognosis.
  • Recent advancements in large-scale sequencing and AI, particularly machine learning, can help analyze extensive data on microorganisms and their link to skin diseases.
  • This review highlights the innovative applications of AI, including recognizing fungi with convolutional neural networks and combining microbial genome sequencing with machine learning for better diagnosis related to skin health.
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Microorganisms, which are widely distributed in nature and human body, show unique application value in forensic identification. Recent advances in high-throughput sequencing technology and significant reductions in analysis costs have markedly promoted the development of forensic microbiology and metagenomics. The rapid progression of artificial intelligence (AI) methods and computational approaches has shown their unique application value in forensics and their potential to address relevant forensic questions.

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Salinization of soil is a major environmental risk factor to plant functions, leading to a reduction of productivity of crops and forage. , seed-borne endophytic fungi, establishes a mutualistic symbiotic relationship with and confers salt tolerance in the host plants. In this study, analysis of transcriptome and metabolome was used to explore the potential molecular mechanism underlying the salt-adaptation of roots mediated by .

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The distinction between Keratoacanthoma (KA) and Cutaneous Squamous Cell Carcinoma (cSCC) is critical yet usually challenging to discriminate clinically and histopathologically. One approach to differentiate KA from cSCC is through assessing the immunohistochemical staining patterns of the three indicators, -catenin, C-Myc, and CyclinD1, which are critical molecules that play important roles in the Wnt/-catenin signaling pathway. Ki-67, as a proliferation biomarker for human tumor cells, was also assessed as an additional potential marker for differentiating KA from cSCC.

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Bacteraemia has attracted great attention owing to its serious outcomes, including deterioration of the primary disease, infection, severe sepsis, overwhelming septic shock or even death. Candidemia, secondary to bacteraemia, is frequently seen in hospitalised patients, especially in those with weak immune systems, and may lead to lethal outcomes and a poor prognosis. Moreover, higher morbidity and mortality associated with candidemia.

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Background: Invasive candidiasis is a common cancer-related complication with a high fatality rate. If patients with a high risk of dying in the hospital are identified early and accurately, physicians can make better clinical judgments. However, epidemiological analyses and mortality prediction models of cancer patients with invasive candidiasis remain limited.

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  • The study examines a growing issue of invasive candidal and bacterial bloodstream infections in hospitalized patients, highlighting the limited data available for China.
  • It analyzes data from 246 patients treated between 2013 and 2018, focusing on demographic information, hospitalization duration, and common health indicators.
  • The findings reveal that significant predictors for mortality include age, serum creatinine level, and other clinical indicators, with Candida parapsilosis and Acinetobacter baumannii being the most frequent pathogens involved.
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  • Seed-borne endophytes enhance salt tolerance and biomass in host grasses, but their mechanism of action is not well understood.
  • Researchers utilized PacBio RS II technology to analyze the full-length transcriptome and discovered thousands of genes and transcription factors related to this salt tolerance.
  • The study identified specific genes involved in various biological processes that are differentially expressed under salt stress, highlighting the endophytes' role in improving host grasses' adaptation to NaCl stress.
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  • * A four-gene prognostic model involving BASP1-AS1 and others was developed using data from The Cancer Genome Atlas and validated with an external series.
  • * BASP1-AS1 promotes melanoma cell growth and spread by interacting with YBX1 to activate the Notch signaling pathway, leading to the expression of oncogenes that drive cancer progression.
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Background: Lysine succinylation is a newly identified posttranslational modification (PTM), which exists widely from prokaryotes to eukaryotes and participates in various cellular processes, especially in the metabolic processes. is a commensal bacterium in the skin, which attracts more attention as a pathogen, especially in immunocompromised patients and neonates by attaching to medical devices and forming biofilms. However, the significance of lysine succinylation in proteins has not been investigated.

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Henoch-Schönlein purpura nephritis (HSPN) has been considered as a major cause of chronic renal failure in children and a condition which can worsen clinical outcomes in adults. At present, the molecular mechanisms of HSPN are still unclear. In this study, iTRAQ quantitative proteomic analysis was performed on renal tissues collected from patients with HSPN and compared with those of patients after nephrectomy (controls).

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Invasive fungal infection (IFI) is one of the most common nosocomial infections. However, data on the epidemiology of IFI and susceptibility to antifungal agents in China are quite limited, and in particular, no current data exist on the microbiological, and clinical characteristics of IFI patients in Northeast China. The purpose of this study was to provide a retrospective review of the clinical characteristics, laboratory test results, and risk factor predictions of inpatients diagnosed with IFI.

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  • Sarcomas are rare cancers, making up about 1% of solid tumors in adults, and consist of over 70 subtypes with varying characteristics.
  • Researchers analyzed RNA-seq data and clinical information to identify prognostic biomarkers in sarcomas, focusing on four pathological subtypes: dedifferentiated liposarcoma, leiomyosarcoma, undifferentiated pleomorphic sarcomas, and myxofibrosarcoma.
  • The study found that the drug Tanespimycin inhibits the spread of leiomyosarcoma and could be a potential treatment, leading to new insights into sarcoma pathogenesis, diagnosis, treatment, and prognosis.
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Background: Hyperthermia in combination with DnaJA4-knockout (KO) obviously affects the anti-viral immunity of HaCaT cells. The mechanisms of this process are not yet fully explored. However, it is known that DnaJA4 interacts with actin cytoskeleton after hyperthermia.

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  • IL-18 is a pro-inflammatory cytokine that significantly impacts the development of atopic dermatitis (AD) in mice, with effects seen in skin lesions and immune response.
  • The study involved four groups of mice, including wild-type and IL-18 knockout, with MC903 applied to induce AD-like symptoms.
  • Results showed that IL-18 knockout reduced AD symptoms, altered cytokine levels, and affected skin protein expression, suggesting IL-18's crucial role in the severity of AD.
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Background: Melanoma is a highly invasive malignant skin tumor. While melanoma may share some similarities with that of melanocytic nevi, there also exist a number of distinct differences between these conditions. An analysis of these differences may provide a means to more effectively evaluate the etiology and pathogenesis of melanoma.

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Background: Currently, effective genetic markers are limited to predict the clinical outcome of melanoma. High-throughput multiomics sequencing data have provided a valuable approach for the identification of genes associated with cancer prognosis.

Method: The multidimensional data of melanoma patients, including clinical, genomic, and transcriptomic data, were obtained from The Cancer Genome Atlas (TCGA).

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Carpetgrass () is a creeping, stoloniferous, perennial warm-season grass that is adapted to humid tropical and subtropical climates. Recently, outbreaks of anthracnose disease of caused by an unidentified sp. were observed in the Hainan and Guangdong provinces in southern China.

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