Publications by authors named "Xu Xun"

Purpose: To investigate the utility of combining clinical and contrasted-enhanced tomography (CECT) parameters for the preoperative evaluation of perineural invasion (PNI) in gallbladder carcinoma (GBC).

Methods: A total of 134 patients with GBC (male/female, 52/82; age, 64.4 ± 9.

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The simultaneous detection of proteins and microRNA (miRNA) at the single extracellular vesicle (EV) level shows great promise for precise disease profiling, owing to the heterogeneity and scarcity of tumor-derived EVs. However, a highly reliable method for multiple-target analysis of single EVs remains to be developed. In this study, a igital ual CRISPR-Cas-powered ingle V valuation () system was proposed to enable the concurrent detection of surface protein and inner miRNA of EVs at the single-molecule level.

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Chloroplasts are not only places for photosynthesis, but also participate in plant immunity and are important targets of pathogens. Pathogens secrete chloroplast-targeted proteins (CTPs) that disrupt host immunity and promote infection. (Lib.

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The development of anode materials with high rate performance as well as favourable working durability is key for next-generation lithium-ion batteries (LIBs). Here, MgVO is reported as an advanced anode material, using a facile and scalable solution combustion technology. The MgVO anode shows a "near-zero" volume change (<10% over 1000 cycles).

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Purpose: To investigate longitudinal changes in choroidal thickness (ChT) after 1-year treatment of repeated low-level red-light (RLRL) and their predictive value in efficacy on myopia prevention and myopic shift among pre-myopic children.

Methods: 278 pre-myopic (-0.50 D < spherical equivalent refraction, SER ≤ 0.

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Optical coherence tomography (OCT) has become the leading imaging technique in diagnosing and treatment planning for retinal diseases. Retinal OCT image segmentation involves extracting lesions and/or tissue structures to aid in the decisions of ophthalmologists, and multi-class segmentation is commonly needed. As the target regions often spread widely inside the retina, and the intensities and locations of different categories can be close, good segmentation networks must possess both global modeling capabilities and the ability to capture fine details.

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The development of spatially resolved transcriptomics (ST) technologies has made it possible to measure gene expression profiles coupled with cellular spatial context and assist biologists in comprehensively characterizing cellular phenotype heterogeneity and tissue microenvironment. Spatial clustering is vital for biological downstream analysis. However, due to high noise and dropout events, clustering spatial transcriptomics data poses numerous challenges due to the lack of effective algorithms.

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Simultaneous detection of multiple nucleic acid targets from a single sample is a common requirement in molecular diagnosis and basic research. Dividing a bulky polymerase chain reaction (PCR) into many isolated small reaction units through microfluidic technology is commonly used to realize this goal. However, previous microfluidic platforms for multiplex PCR suffer from complex structures and strict operation requirements.

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Background: Recently, a growing number of studies have specifically examined the impact of dietary variables on the development and progression of amyotrophic lateral sclerosis (ALS). The purpose of this study was to investigate the correlation between different dietary patterns and Chinese ALS patients' prognosis.

Methods: A retrospective study was conducted by recruiting 590 patients with ALS who attended and were regularly followed at hospitals in Nanjing from 2016 to 2023.

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Quantifying spatiotemporal dynamics during embryogenesis is crucial for understanding congenital diseases. We developed Spateo (https://github.com/aristoteleo/spateo-release), a 3D spatiotemporal modeling framework, and applied it to a 3D mouse embryogenesis atlas at E9.

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Spatial-transcriptomics technologies have demonstrated exceptional performance in characterizing brain and visceral organ tissues, as well as brain and retinal organoids. However, it has not yet been proven whether spatial transcriptomics can effectively characterize primary tissue-derived organoids, as the standardized tissue sectioning or slicing methods are not applicable for such organoids. Herein, we present a technique, lamination-based organoid spatially resolved transcriptomics (LOSRT), for organoid-spatially resolved transcriptomics based on organoid lamination.

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Article Synopsis
  • The study examines the urinary microbiome's role in health and disease by analyzing a large cohort of 1,579 Chinese individuals using advanced sequencing techniques.
  • Researchers identified five unique microbial profiles, known as "urotypes," and found that gender and sex hormones significantly influence these microbiomes.
  • Additionally, the study revealed 43 genetic associations linked to specific urinary bacteria, underscoring the complex relationship between host genetics and microbiome composition.
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Unlabelled: Hydrogel has emerged as a promising wound dressing material, and in situ forming hydrogel has emerged as a promising wound dressing recently. But most in situ forming hydrogel are normally unstable. Herein, we report an in-situ forming hydrogel synthesized from poly(Nisopropylacrylamide166---butyl acrylate9)-poly(ethyleneglycol)-poly(N-isopropylacrylamide166---butyl acrylate9) copolymer (P(NIPAM166--nBA9)-PEG-P(NIPAM166-conBA9), denoted as PEP) and zinc oxide nano-particle(ZnO nano-particle) in response to skin temperature.

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Article Synopsis
  • Spatial transcriptome (ST) technologies are vital for understanding tumor biology, but existing analysis tools mainly focus on single-cell RNA sequencing, neglecting spatial data integration.
  • This study introduces StereoSiTE, a new analytical framework that merges open-source bioinformatics with custom algorithms to assess spatial cell interaction intensity (SCII) in cellular neighborhoods, enhancing the understanding of intercellular interactions and cellular contexts.
  • StereoSiTE helps researchers identify significant cellular regions, such as those dominated by neutrophils, and analyze their role in the immune tumor microenvironment after treatment, making the software user-friendly and accessible for a broad audience.
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The placenta, a temporary but essential organ for gestational support, undergoes intricate morphological and functional transformations throughout gestation. However, the spatiotemporal patterns of gene expression underlying placentation remain poorly understood. Utilizing Stereo-seq, we constructed a Mouse Placentation Spatiotemporal Transcriptomic Atlas (MPSTA) spanning from embryonic day (E) 7.

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Magnetic liquid-bodied microrobots (MRs) possess nearly infinite shape adaptivity. However, they currently confront the risk of structure instability/crushes during shape-morphing in tiny biological environments. This article reports that magnetic liquid metal (LM) MRs (LMMRs) show high structure stability and robust magnetic maneuverability.

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How the lung achieves immune homeostasis after a pulmonary infection is not fully understood. Here, we analyzed the spatiotemporal changes in the lungs over a 2-week natural recovery from severe pneumonia in a Syrian hamster model of SARS-CoV-2 infection. We find that SARS-CoV-2 infects multiple cell types and causes massive cell death at the early stage, including alveolar macrophages.

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Article Synopsis
  • The study illustrates how immune cells in the lungs coordinate to detect and manage SARS-CoV-2 infection using a technique called immunocartography, which combines spatial and single-cell RNA sequencing.
  • Researchers mapped the immune response throughout the infection process in Syrian hamsters, analyzing over 142,000 cells from 25 animals at five different time points.
  • Key findings highlight the role of specific immune cell interactions in tackling the virus and restoring lung function, with implications for understanding lung immunity in both mice and humans.
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Article Synopsis
  • Monitoring biochemical changes during pregnancy is crucial for the health of both mothers and babies, enabling early intervention for potential issues.
  • A genetic analysis of over 20,000 Chinese women identified 410 trait-locus associations related to pregnancy, with many being newly discovered associations.
  • The research highlighted important biological pathways involved in pregnancy, such as hormone regulation and immune response, furthering our understanding of how genetics influence pregnancy outcomes and maternal health.
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Article Synopsis
  • Metabolites are crucial for monitoring health and therapeutic targets, yet their genetic influences during pregnancy remain largely unexplored.
  • A genome-wide association study was conducted using genetic data from 34,394 pregnant Chinese women, identifying 53 metabolite-gene associations, with 23 being new findings.
  • The research uncovered significant gene-environment interactions during pregnancy, with half of the associations showing pleiotropy and potential causal links between maternal metabolites and various human traits and diseases.
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Glycemic traits are critical indicators of maternal and fetal health during pregnancy. We performed genetic analysis for five glycemic traits in 14,744 Chinese pregnant women. Our genome-wide association study identified 25 locus-trait associations, including established links between gestational diabetes mellitus (GDM) and the genes CDKAL1 and MTNR1B.

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Article Synopsis
  • Respiratory diseases affect people worldwide and studies suggest there are notable differences in how men and women experience respiratory infections, potentially linked to the nasal microbiome.
  • This research analyzed the nasal microbiome of 1,593 healthy young adults using advanced sequencing methods, creating a detailed catalog of nasal bacteria and fungi.
  • The findings revealed significant sex differences in the nasal microbiome, with women showing greater ecological stability, which could provide insights into why respiratory diseases present differently in men and women.
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Aim: To determine the regional and ethnic differences in ocular axial elongation and refractive error progression in myopic and non-myopic children.

Methods: A retrospective analysis of 15 longitudinal clinical and population-based studies was conducted in the UK, Sweden, Australia (classified as European), China, and Vietnam (classified as East Asian) between 2005 and 2021. A total of 14,593 data points from 6208 participants aged 6-16 years with spherical equivalent from +6 to -6 D were analysed.

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The practical application of aqueous zinc-ion batteries (AZIBs) is hindered by their low coulombic efficiency (CE) and unstable cycle life. Numerous electrolyte-additive-related studies have been performed, but most of the focus has been on the Zn plating process. In fact, practical AZIBs undergo stripping in practice rather than plating in the initial cycle, because the commonly used cathodes in the charged state do not have zinc ions, so a uniform stripping process is crucial for the cell performance of AZIBs.

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