Publications by authors named "Xinrui Shi"

Escherichia coli (E. coli) O157:H7 is an important food-borne pathogen that can cause hemorrhagic diarrhea and enteritis in humans and animals. Realizing the rapid quantitation of E.

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  • Elevated atmospheric CO concentration and increased temperature both significantly affect wheat growth, but research on their combined effects is limited.
  • In a controlled study, elevated CO enhanced carbohydrate accumulation and yield by 20.1%, yet did not counteract the warming-related shortening of the wheat growth period.
  • Despite increased yields, elevated CO reduced nitrogen assimilation and grain protein content by 19.4% under higher temperatures, indicating a potential trade-off between yield and nutritional quality in future warming scenarios.
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  • The study aimed to assess how effective and safe the RLRL treatment is in slowing the progression of high myopia in children aged 7 to 12 years with significant nearsightedness (≥ -6.00 D).
  • Conducted as a multicenter, randomized, and single-blind clinical trial, 202 children were divided into two groups: one receiving RLRL treatment plus standard spectacles, and the other receiving only standard spectacles over a 12-month period.
  • Results showed that the group receiving RLRL experienced a reduction in both axial length and spherical equivalent refraction, indicating less progression of myopia compared to the control group, along with some positive changes in choroidal and retinal thickness.
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  • * Conducted as a double-blind, randomized trial, 46 participants received either active tACS or sham stimulation over 30 sessions, with evaluations on cognitive tests and brain activity at multiple time points.
  • * Results indicated no significant difference in the primary cognitive measure, but the tACS group showed improvements in secondary cognitive assessments, linking enhanced hippocampal activity with cognitive performance, despite improvements not lasting at the 3-month follow-up.
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Human endogenous retroviruses (HERVs) are emerging as critical elements in host genomic regulation. Aberrant HERV transcription has been implicated in developmental and tissue-specific aging and pathological processes. In this study, we presented a comprehensive locus-specific characterization of the HERV expression landscape in esophageal squamous cell carcinoma (ESCC).

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Background: There has been a gradual increase in the proportion of preterm birth in China during the past several decades. Maternal malnutrition is a significant determinant for preterm birth. Nevertheless, comprehensive studies investigating serum mineral levels during pregnancy associated with preterm birth remain scarce.

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Read-through chimeric RNAs are being recognized as a means to expand the functional transcriptome and contribute to cancer tumorigenesis when mis-regulated. However, current software tools often fail to predict them. We have developed RTCpredictor, utilizing a fast ripgrep tool to search for all possible exon-exon combinations of parental gene pairs.

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Microbial-driven N turnover is important in regulating N fertilizer use efficiency through the secretion of metabolites like glycolipids. Currently, our understanding of the potential of glycolipids to partially reduce N fertilizer use and the effects of glycolipids on crop yield and N use efficiency is still limited. Here, a three-year in situ field experiment was conducted with seven treatments: no fertilization (CK); chemical N, phosphorus and potassium (NPK); NPK plus glycolipids (N+PKT); and PK plus glycolipids with 10% (0.

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RNA processing mechanisms, such as alternative splicing and RNA editing, have been recognized as critical means to expand the transcriptome. Chimeric RNAs formed by intergenic splicing provide another potential layer of RNA diversification. By analyzing a large set of RNA-Seq data and validating results in over 1,200 blood samples, we identified , a female-specific chimeric transcript.

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Background: Intrahepatic cholestasis of pregnancy (ICP) is associated with adverse pregnancy outcomes; however, the underlying mechanisms are not fully understood.

Aims: This study aimed to determine the role of exosomal miR-6891-5p in placental trophoblast dysfunction in ICP and identify new biomarkers for ICP diagnosis.

Methods: Serum samples were collected from ICP patients and healthy pregnant women, and serum exosomes were extracted and identified.

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Background: Abnormal bile acid metabolism leading to changes in placental function during pregnancy. To determine whether endoplasmic reticulum protein 29 (ERp29) can mediate the pregnancy effects of cholestasis by altering the level of trophoblast cell apoptosis.

Methods: ERp29 in serum of 66 intrahepatic cholestasis of pregnancy (ICP) pregnant women and 74 healthy were detected by ELISA.

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Circular RNAs (circRNAs) are a family of endogenous RNAs that have become a focus of biological research in recent years. Emerging evidence has revealed that circRNAs exert biological functions by acting as transcriptional regulators, microRNA sponges, and binding partners with RNA-binding proteins. However, few studies have identified coding circRNAs, which may lead to a hidden repertoire of proteins.

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The atmospheric [CO] and the frequency and intensity of extreme weather events such as drought are increased, leading to uncertainty to soybean production. Elevated [CO] (eCO) partially mitigates the adverse effects of drought stress on crop growth and photosynthetic performance, but the mitigative mechanism is not well understood. In this study, soybean seedlings under drought stress simulated by PEG-6000 were grown in climate chambers with different [CO] (400 μmol mol and 700 μmol mol).

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Background: Life satisfaction (LS) serves as a crucial indicator of social wellbeing and plays a significant role in formulating strategies aimed at enhancing health outcomes among the hearing-disabled population. This study aimed to examine the effect of anxiety, depression, and structural social capital on life satisfaction among people with hearing disabilities in Shanghai, China.

Methods: A cross-sectional study was conducted in Shanghai, China.

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The low detection sensitivity of lateral-flow immunochromatography assay (LFIA) based on spherical gold nanoparticle (AuNP) limits its wide applications. In the present study, AuNP dimers with strong plasma scattering and robust signal output were synthesized via the Ag ion soldering (AIS) strategy and used as labeled probes in LFIA to boost the sensitivity without any extra operation process and equipment. The established LFIA exhibited high sensitivity with a limit of detection (LOD) of 2.

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Coronary artery disease (CAD) is one of the most life-threatening cardiovascular emergencies with high mortality and morbidity. Increasing evidence has demonstrated that the degree of hypoxia is closely associated with the development and survival outcomes of CAD patients. However, the role of hypoxia in CAD has not been elucidated.

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Inhibin subunit beta A (INHBA) is a member of the transforming growth factor-beta (TGF-β) superfamily that plays a fundamental role in various cancers. However, a systematic analysis of the exact role of INHBA in patients with gastric cancer (GC) has not yet been conducted. We evaluated the expression levels of INHBA and the correlation between INHBA and GC prognosis in GC.

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Hepatocellular carcinoma (HCC) is the most common fatal cancer worldwide, patients with HCC have a high mortality rate and poor prognosis. PANoptosis is a novel discovery of programmed cell death associated with cancer development. However, the role of PANoptosis in HCC remains obscure.

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  • The study investigates how nitrous oxide (NO) emissions interact with straw management and future climate conditions (elevated CO and temperature) in wheat ecosystems.
  • Findings indicate that returning straw (via incorporation or mulching) significantly increases NO emissions, but also enhances soil carbon and nitrogen levels, as well as denitrifying genes.
  • Return of straw is beneficial in mitigating climate change by reducing the net global warming potential (NGWP) and greenhouse gas intensity (GHGI), while simultaneously boosting grain yield and soil organic carbon sequestration.
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  • The frequency of drought is expected to rise due to climate change, which, along with higher atmospheric CO2 levels, will impact crop growth, specifically foxtail millet in this study.
  • Experiments showed that elevated CO2 increased starch and antioxidant enzyme levels in millet leaves, enhancing photosynthesis and water use efficiency, particularly under mild drought.
  • Under mild drought, higher CO2 concentrations significantly boosted grain yield and spike numbers, suggesting that elevated CO2 can mitigate some negative effects of reduced water availability on millet production.
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Rhabdomyosarcoma (RMS) is one of the most common pediatric soft-tissue cancer. Previously, we discovered a gene fusion, formed by chromosomal inversion in RMS. Suspecting that forming a fusion with a housekeeping gene may be one of the mechanisms to dysregulate an oncogene, we investigated AVIL expression and its role in RMS.

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Antimicrobial drugs are frequently used in a combination or shuttle way to cope with coinfection of bacteria or parasites and prevent drug resistance, thus the accurate quantification of multiple drug residues in animal-derived foods is crucial to ensure food safety. Here, a simple and efficient high-performance liquid chromatography-photodiode array (HPLC-PDA) method was established for the simultaneous quantitative screening of six common residues of antiparasitic drugs, including abamectin (ABM), ivermectin (IVM), albendazole (ABZ) and the three metabolites of ABZ in beef and chicken. The LODs and LOQs for six target compounds in beef and chicken are determined to be 3.

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  • Cadmium (Cd) pollution negatively affects plant growth and food safety, but elevated CO concentration (EC) may help reduce these adverse effects, especially in soybeans.
  • Research showed that EC improves the weight of soybean roots and leaves, increases protective compounds, and enhances detoxification processes during Cd stress.
  • The study identifies key genes involved in Cd transport and compartmentalization, suggesting that manipulating these genes could lead to the development of Cd-tolerant soybean varieties for future agricultural sustainability.
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The prevalence of ocular disorders is dramatically increasing worldwide, especially those that cause visual impairment and permanent loss of vision, including cataract, glaucoma, age-related macular degeneration, and diabetic retinopathy. Extensive evidence has shown that ncRNAs are key regulators in various biogenesis and biological functions, controlling gene expression related to histogenesis and cell differentiation in ocular tissues. Aberrant expression and function of ncRNA can lead to dysfunction of visual system and mediate progression of eye disorders.

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Synopsis of recent research by authors named "Xinrui Shi"

  • - Xinrui Shi's recent research spans multiple fields, focusing on plant biology, ophthalmology, maternal health, and cancer genomics, highlighting the intersection of environmental factors and biological processes.
  • - Notable findings include the impact of elevated CO concentrations on wheat growth, the effectiveness of red-light therapy for high myopia, and insights into chimeric RNAs related to placental health and cancer, emphasizing novel potential biomarkers.
  • - Shi's studies employ various methodologies, such as randomized controlled trials, transcriptomic analyses, and field experiments, suggesting an interdisciplinary approach aimed at addressing complex health and environmental challenges.