Publications by authors named "Xinjia Li"

This study investigates the prediction of ground loss rate during soft-soil shield tunneling using Peck's back analysis method and XGBoost model. Bayesian optimization is employed to determine optimal hyperparameters, ensuring comprehensive and efficient model tuning. The XGBoost model is compared with Random Forest (RF) and Support Vector Machine (SVM) models to benchmark its performance.

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Article Synopsis
  • Esterase EstSIT01, discovered from Microbacterium chocolatum SIT101 through genome analysis, is a highly efficient biocatalyst for producing chiral compounds, particularly in hydrolyzing a specific meso-dimethyl ester.
  • The esterase achieved over 99% yield and enantiomeric excess for a key intermediate in d-biotin synthesis and exhibited over 40 times higher activity when expressed in recombinant E. coli compared to the wild strain.
  • Optimal activity for EstSIT01 occurs at 45 °C and pH 10, with its unique structural features contributing to its strong preference for short-chain esters and high stereoselectivity
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In the field of pathology, the scarcity of certain diseases and the difficulty of annotating images hinder the development of large, high-quality datasets, which in turn affects the advancement of deep learning-assisted diagnostics. Few-shot learning has demonstrated unique advantages in modeling tasks with limited data, yet explorations of this method in the field of pathology remain in the early stages. To address this issue, we present a dual-channel prototype network (DCPN), a novel few-shot learning approach for efficiently classifying pathology images with limited data.

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Responsible for synthesizing the complementary strand of the DNA template, DNA polymerase is a crucial enzyme in DNA replication, recombination and repair. A highly conserved tyrosine (Tyr), located at the C-terminus of the O-helix in family A DNA polymerases, plays a critical role in enzyme activity and fidelity. Here, we combined the technology of genetic code extension to incorporate non-canonical amino acids and molecular dynamics (MD) simulations to uncover the mechanisms by which Tyr671 impacts substrate binding and conformation transitions in a DNA polymerase from Thermus aquaticus.

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Ghost imaging technology has a great application potential in optical security because of its non-local characteristics. In this paper, on the basis of computational ghost imaging, an optical authentication scheme is proposed that utilizes the correspondence imaging technique for the preliminary reconstruction of the object image, and then authenticates the image by a nonlinear correlation algorithm. Different from the previous optical authentication schemes that usually adopted random selection of measurements, this authentication method consciously selects the bucket detector measurement values with large fluctuation and can achieve authentication using ultra-low data volumes less than 1% of the Nyquist limit.

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Engineering Taq DNA polymerase (TaqPol) for improved activity, stability and sensitivity was critical for its wide applications. Multiple sequence alignment (MSA) has been widely used in engineering enzymes for improved properties. Here, we first designed TaqPol mutations based on MSA of 2756 sequences from both thermophilic and non-thermophilic organisms.

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Compressive ghost imaging (CGI) can effectively reduce the number of measurements required for ghost imaging reconstruction. In most cases, however, when using illumination patterns as measurement matrices, CGI has not demonstrated the ability to reconstruct high-quality images at an ultra-low sampling rate as perfect as claimed by compressive sensing theory. According to our analysis, the reason is that the non-negative nature of light intensity causes measurement matrix in compressive ghost imaging to be inconsistent with the essential requirements of good measurement matrix in compressive sensing theory, leading to low reconstruction quality.

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Microglia are the resident immune cells in the central nervous system (CNS), which play important roles in the repair of neuroinflammatory injury. The present study investigated the anti-neuroinflammatory effects of vinpocetine induced by lipopolysaccharide (LPS) in BV2 microglia. BV2 microglia were pretreated with vinpocetine, and then stimulated with LPS (100 ng/mL).

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The orbital angular momentum (OAM)-based acoustic vortex (AV) communication has been proven to provide a topological spinning characteristics for data transmission with an improved channel capacity, exhibiting good application prospects in underwater acoustic communications. To improve the accuracy and efficiency of data communication, the spectrum decomposition of OAM modes for OAM-multiplexed AV beams is studied with a simplified structure of single-ring transceiver arrays. The principle of spectrum decomposition for the single-OAM or OAM-multiplexed AV beams is derived based on the phase-coded approach and the orthogonal property of AVs.

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The venom of various species is composed of a rich variety of unique bioactive peptides, commonly referred to as conotoxins (conopeptides). Most conopeptides have specific receptors or ion channels as physiologically relevant targets. In this paper, high-throughput transcriptome sequencing was performed to analyze putative conotoxin transcripts from the venom duct of a vermivorous cone snail species, native to the South China Sea.

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Two new hexenol glycosides, ()-hex-3-en-1-ol O--d-xylcopyranosyl-(1-6)- -d-glucopyranosyl-(1-2)--d-glucopyranoside () and ()-hex-3-en-1-ol O--d-xylcopyranosyl-(1-6)--d-glucopyranosyl-(1-2)--d-glucopyranoside (2), were isolated from the 50% ethanol elution of macroporous resin of var. . Their structures were established by detailed spectroscopic analysis, including extensive 2D-NMR data.

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A sound theoretical rationale for the design of a magnetic nanocarrier capable of magnetic capture in vivo after intravenous administration could help elucidate the parameters necessary for in vivo magnetic tumor targeting. In this work, we utilized our long-circulating polymeric magnetic nanocarriers, encapsulating increasing amounts of superparamagnetic iron oxide nanoparticles (SPIONs) in a biocompatible oil carrier, to study the effects of SPION loading and of applied magnetic field strength on magnetic tumor targeting in CT26 tumor-bearing mice. Under controlled conditions, the in vivo magnetic targeting was quantified and found to be directly proportional to SPION loading and magnetic field strength.

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