Publications by authors named "Xingyu Xie"

Metabolic dysfunction-associated steatohepatitis (MASH) is a severe metabolic dysfunction-associated steatotic liver disease (MASLD) characterized by abnormal hepatic steatosis and inflammation. Previous studies have shown that Patchouli alcohol (PA), the primary component of Pogostemonis Herba, can alleviate digestive system diseases. However, its protection against MASH remains unclear.

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In deep learning, different kinds of deep networks typically need different optimizers, which have to be chosen after multiple trials, making the training process inefficient. To relieve this issue and consistently improve the model training speed across deep networks, we propose the ADAptive Nesterov momentum algorithm, Adan for short. Adan first reformulates the vanilla Nesterov acceleration to develop a new Nesterov momentum estimation (NME) method, which avoids the extra overhead of computing gradient at the extrapolation point.

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Article Synopsis
  • Soil microorganisms serve as crucial indicators for assessing the restoration of wetland ecosystems, with a study exploring the Naolihe Wetland's various restoration stages using a "time and space parallel" approach.
  • The research looked at four distinct stages, ranging from corn fields to natural wetlands, to analyze microbial community composition and diversity through advanced gene sequencing techniques.
  • Findings revealed significant differences in soil physicochemical properties and enzyme activities across restoration stages, along with notable shifts in the diversity of bacteria and fungi, highlighting the importance of restoration duration on microbial community structure.*
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AdamW modifies Adam by adding a decoupled weight decay to decay network weights per training iteration. For adaptive algorithms, this decoupled weight decay does not affect specific optimization steps, and differs from the widely used l-regularizer which changes optimization steps via changing the first- and second-order gradient moments. Despite its great practical success, for AdamW, its convergence behavior and generalization improvement over Adam and l-regularized Adam ( l-Adam) remain absent yet.

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Background: Finite element (FE) analysis and clinical follow-up were used to evaluate the efficacy of a modified lateral column lengthening (H-LCL) for treating flexible flatfoot.

Methods: By applying inclusion and exclusion criteria, we selected patients who underwent H-LCL surgery at our institution from January 2019 to January 2023. We compared the Visual Analog Scale (VAS) scores, American Orthopaedic Foot and Ankle Society (AOFAS) scores, Pain Interference (PI), and Physical Function (PF) scores in Patient-Reported Outcomes Measurement Information System (PROMIS) between preoperative and final follow-up assessments of patients, as well as FE submodels.

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The promotion of excess low-density lipoprotein (LDL) clearance stands as an effective clinical approach for treating hyperlipidemia. Tetrahydroberberine, a metabolite of berberine, exhibits superior bioavailability compared to berberine and demonstrates a pronounced hypolipidemic effect. Despite these characteristics, the impact of tetrahydroberberine on improving excessive LDL clearance in hyperlipidemia has remained unexplored.

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Background: Eosinophilic granulomatosis with polyangiitis (EGPA), formerly known as Churg-Strauss syndrome, is a rare form of anti-neutrophil cytoplasmic antibody-associated vasculitis characterized by asthma, vasculitis, and eosinophilia.

Case Summary: We report an atypical case of EGPA in a 20-year-old female patient. Unlike previously reported cases of EGPA, this patient's initial symptom was asthma associated with a respiratory infection.

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Actinides are an important component of nuclear fuel for nuclear power and affect human health, and a key process in the transport of radionuclides in the environment is adsorption on mineral surfaces. In this work, we have used density functional theory (DFT) to investigate the microscopic adsorption and diffusion mechanisms of actinyls, U(V), U(VI), Np(V), Np(VI) Pu(V), and Pu(VI), on the gibbsite (001) surface. Actinyls(VI) are attached to the gibbsite surface through two An-O bonds, which results in a bidentate inner sphere mode, while actinyls(V) favor a monodentate inner sphere adsorption mode with the gibbsite (001) surface.

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Breast cancer was the most commonly diagnosed cancer among women worldwide in 2020. Recently, several deep learning-based classification approaches have been proposed to screen breast cancer in mammograms. However, most of these approaches require additional detection or segmentation annotations.

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Purpose: The active melanocytes in the skin were affected by hormones and ultraviolet (UV) irradiation. Licorice zinc has a whitening effect, which may have a prominent potential in the treatment of pigmented skin disease.

Methods: Modeling chloasma C57BL/6J mice by daily progesterone injection (15 mg/kg) and ultraviolet B (UVB) irradiation (λ = 312 nm, 2 h/day) for 30 days.

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In order to prove that SOX9 in keratinocytes regulates claudin 2 transcription during skin aging, the skin of 8-week-old and 24-month-old mice is sequenced to obtain a differentially expressed gene SOX9. The gene is mainly expressed in keratinocytes, and it increases first and then decreases from newborn to aging. Six core sequences of SOX9 and claudin 2 are predicted from Jaspar.

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To reveal the mystery behind deep neural networks (DNNs), optimization may offer a good perspective. There are already some clues showing the strong connection between DNNs and optimization problems, e.g.

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Objective: To investigate the effectiveness of anatomical reconstruction of the anterior talofibular ligament by partial peroneal brevis tendon combined with double intra-fix screws.

Methods: A clinical data of 46 patients with the anterior talofibular ligament rupture admitted between September 2015 and October 2019 and met the selection criteria were retrospectively analyzed. All anterior talofibular ligaments were reconstructed with partial peroneal brevis tendon and fixed with double intra-fix screws.

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Point cloud is the primary source from 3D scanners and depth cameras. It usually contains more raw geometric features, as well as higher levels of noise than the reconstructed mesh. Although many mesh denoising methods have proven to be effective in noise removal, they hardly work well on noisy point clouds.

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Mesh denoising is a classical, yet not well-solved problem in digital geometry processing. The challenge arises from noise removal with the minimal disturbance of surface intrinsic properties (e.g.

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While current block diagonal constrained subspace clustering methods are performed explicitly on the original data space, in practice, it is often more desirable to embed the block diagonal prior into the reproducing kernel Hilbert feature space by kernelization techniques, as the underlying data structure in reality is usually nonlinear. However, it is still unknown how to carry out the embedding and kernelization in the models with block diagonal constraints. In this paper, we shall take a step in this direction.

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Synopsis of recent research by authors named "Xingyu Xie"

  • - Xingyu Xie's recent research spans multiple fields, including health sciences, deep learning optimization, and environmental biology, with significant contributions to understanding metabolic liver diseases, deep learning algorithms, and soil microbial diversity.
  • - In metabolic health, Xie's work highlights the protective effects of compounds like Patchouli alcohol and Tetrahydroberberine against hepatic steatosis and hyperlipidemia, offering potential therapeutic insights for steatotic liver diseases and cholesterol management.
  • - The research also focuses on the development of advanced algorithms like the Adan for optimizing deep models, alongside investigations into soil microbial communities' responses to wetland restoration efforts, underscoring Xie's interdisciplinary approach to complex scientific problems.