Publications by authors named "XiaoDong Ding"

Article Synopsis
  • SR proteins are crucial for pre-mRNA splicing and plant development, yet studies on these proteins in legumes, like wild soybean, are limited.
  • A genome-wide analysis identified 31 SR protein genes in wild soybean, revealing their uneven distribution across the chromosomes and showing evolutionary conservation and high phosphorylation.
  • The study demonstrated that these proteins interact significantly with spliceosome components and are highly expressed in root and stem tissues, responding to environmental stresses like salt and alkalinity.*
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Article Synopsis
  • Identifying the best method for assessing the availability of heavy metals like cadmium (Cd) and lead (Pb) in soil is challenging and critical for understanding environmental risks and remediation efforts.
  • This study compared different extraction methods (BCR, Ca(NO), and water extraction) on agricultural soil treated with various amendments to see how well they predict Cd and Pb availability.
  • Results showed that water extraction better reflects the influence of soil amendments and pH on metal availability, making it a promising method for accurately evaluating these heavy metals in soil and guiding remediation strategies.
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There is a long-standing debate over the effectiveness of chemical extraction methods in assessing soil metal phytoavailability. This study addresses the limitations of widely-used chemical extraction methods and presents the water-extractable pool as a more reliable indicator based on wheat pot experiments using homogenized agricultural soil amended with lime materials, phosphate, and biochar. Over 120 days' pot experiments, Cd accumulation in whole wheat plants and tissues exhibited positive relationships with water-extractable Cd concentrations at heading and maturity stage (Spearman's rho: 0.

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Alternative splicing (AS) plays important roles in modulating environmental stress responses in plants. However, little is known about the functions of bicarbonate-induced AS in cultivated soybean (Glycine max L. Merr.

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The interfacial microstructures of Josephson junctions are vital for understanding the microscopic mechanism to improve the performance of superconducting qubits further. However, there remain significant concerns about well understanding the correlation between atomic structures and electrical behaviors. Here, we propose a new method to define the interface of the barrier in Josephson junctions, and investigate the factors that affect the electrical properties of junctions using material analysis techniques and first principles.

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As a generalized quantum machine learning model, parameterized quantum circuits (PQC) have been found to perform poorly in terms of classification accuracy and model scalability for multi-category classification tasks. To address this issue, we propose a scalable parameterized quantum circuits classifier (SPQCC), which performs per-channel PQC and combines the measurements as the output of the trainable parameters of the classifier. By minimizing the cross-entropy loss through optimizing the trainable parameters of PQC, SPQCC leads to a fast convergence of the classifier.

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In recent years, deep learning has been widely used in vulnerability detection with remarkable results. These studies often apply natural language processing (NLP) technologies due to the natural similarity between code and language. Since NLP usually consumes a lot of computing resources, its combination with quantum computing is becoming a valuable research direction.

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Most splicing factors are extensively phosphorylated but their physiological functions in plant salt resistance are still elusive. We found that phosphorylation by SnRK1 kinase is essential for SRRM1L nuclear speckle formation and its splicing factor activity in plant cells. In Arabidopsis, loss-of-function of SRRM1L leads to the occurrence of alternative pre-mRNA splicing events and compromises plant resistance to salt stress.

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Soil microbial taxa have different functional ecological characteristics that influence the direction and intensity of plant-soil feedback responses to changes in the soil environment. However, the responses of soil microbial survival strategies to wet and dry events are poorly understood. In this study, soil physicochemical properties, enzyme activity, and high-throughput sequencing results were comprehensively anal0079zed in the irrigated cropland ecological zone of the northern plains of the Yellow River floodplain of China, where was grown for a long period of time, converted to after a year, and then was planted.

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Quercus wutaishanica is the dominant tree species in the natural ecosystem restoration of temperate forests in China, and it plays an active role in maintaining ecological balance. However, little is known about how ecosystem versatility develops during the restoration of forest ecosystems dominated by Q. wutaishanica.

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Sodium bicarbonate stress caused by NaHCO is one of the most severe abiotic stresses affecting agricultural production worldwide. However, little attention has been given to the molecular mechanisms underlying plant responses to sodium bicarbonate stress. To understand phosphorylation events in signaling pathways triggered by sodium bicarbonate stress, TMT-labeling-based quantitative phosphoproteomic analyses were performed on soybean leaf and root tissues under 50 mM NaHCO treatment.

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Persulfate is considered a convenient and efficient remediation agent for organic contaminated soil. However, the potential risk of sulfur into the soil remediation by persulfate remains ignored. In this study, glass bottles with different persulfate dosages and groundwater tables were set up to simulate persulfate remediation of organic pollutants (aniline).

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SnRK1 protein kinase plays hub roles in plant carbon and nitrogen metabolism. However, the function of SnRK1 in legume nodulation and symbiotic nitrogen fixation is still elusive. In this study, we identified GmNodH, a putative sulfotransferase, as an interacting protein of GmSnRK1 by yeast two-hybrid screen.

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The K-nearest neighbor (KNN) algorithm is one of the most extensively used classification algorithms, while its high time complexity limits its performance in the era of big data. The quantum K-nearest neighbor (QKNN) algorithm can handle the above problem with satisfactory efficiency; however, its accuracy is sacrificed when directly applying the traditional similarity measure based on Euclidean distance. Inspired by the Polar coordinate system and the quantum property, this work proposes a new similarity measure to replace the Euclidean distance, which is defined as Polar distance.

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In order to indicate the effect of volatile fatty acids (VFAs) on the characteristics of feammox and dissimilatory iron reducing bacteria (DIRB) in paddy soils, different VFAs were selected with paddy soils for anaerobic cultivation. Five treatments were set up, respectively, only adding N and both adding N and C (formate + NH (Fo-N), acetate + NH (Ac-N), propionate + NH (Pr-N), and butyrate + NH (Bu-N)) treatments. The concentration of Fe(II), Fe(III), NH, and VFAs was assessed within 45 d, and the bacterial community was determined after cultivation.

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Image matching is an important research topic in computer vision and image processing. However, existing quantum algorithms mainly focus on accurate matching between template pixels, and are not robust to changes in image location and scale. In addition, the similarity calculation of the matching process is a fundamentally important issue.

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This study investigated the influence of the interaction between Fe-based substances and thermal treatment parameters on the leaching behavior of Cr in hazardous waste incineration fly ash (HWIFA) after thermal treatment. The results revealed that the interaction between the addition of Fe-based substance and the thermal treatment parameters and their effects on static and dynamic leaching behaviors of Cr had significant differences when FeO, FeO, and Fe were added, respectively. Specifically, when FeO or Fe was added, the thermal treatment temperature was the most significant factor affecting the static leaching of Cr in thermal treated HWIFA, and the interaction effect of other factors was not significant.

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Protein kinases play crucial roles in the regulation of plant resistance to various stresses. In this work, we determined that GsSnRK1.1 was actively responsive to saline-alkali, drought, and abscisic acid (ABA) stresses by histochemical staining and qRT-PCR analyses.

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Typical value-added platform chemicals 5-hydroxymethylfurfural (HMF) and levulinic acid (LA) can be obtained from hexoses under microwave hydrothermal (MHT) conditions. This study explored the detailed transformation process regarding the MHT products in acidic seawater obtained using glucose and fructose as raw materials. The facile conversion of fructose compared with glucose was mainly ascribed to their different activation energies (56.

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Soil microbes act as "players" in regulating biogeochemical cycles, whereas environmental heterogeneity drives microbial community assembly patterns and is influenced by stochastic and deterministic ecological processes. Currently, the limited understanding of soil microbial community assembly patterns and interactions under temperate forest stand differences pose a challenge in studying the soil microbial involvement during the succession from coniferous to broad-leaved forests. This study investigated the changes in soil bacterial and fungal community diversity and community structure at the regional scale and identified the pathways influencing soil microbial assembly patterns and their interactions.

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Aiming at enhancing the damping and sound absorption performances of nitrile rubber (NBR) incorporated Eucommia ulmoides gum (EUG), a series of NBR/EUG composites were successfully fabricated using an open mixing mill. The co-vulcanization behaviors, fracture surface morphology observations, mechanical and thermal properties and damping and sound absorption performances of NBR/EUG composites were investigated systematically. It was shown that the crystalline area and the amorphous area in NBR/EUG composites displayed a sea-island phase distribution and most of the EUG crystals were β-form crystals.

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Salt stress is one of the most devastating environmental factors threatening soybean growth and yield. However, the molecular link between salt stress and epigenetics has not been well-elucidated in soybean. In this study, from the wild soybean cDNA library, we isolated a GsSnRK1 kinase interacting protein (GsMSTY1) which is phylogenetically homologous with histone acetyltransferase MYST family with unknown function.

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Although greenhouse vegetable production in China is rapidly changing, consumers are concerned about food quality and safety. Studies have shown that greenhouse soils are highly eutrophicated and potentially contaminated by heavy metals. However, to date, no regional study has assessed whether greenhouse soils differ significantly in their heavy metal and nutrient loads compared to adjacent arable land.

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Phytophthora root and stem rot is a worldwide soybean (Glycine max) disease caused by the soil-borne pathogen Phytophthora sojae. This disease is devastating to soybean production, so improvement of resistance to P. sojae is a major target in soybean breeding.

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Drought and alkali stresses cause detrimental effects on plant growth and development. SnRK1 protein kinases act as key energy and stress sensors by phosphorylation-mediated signaling in the regulation of plant defense reactions against adverse environments. To understand SnRK1-dependent phosphorylation events in signaling pathways triggered by abiotic factors, we employed quantitative phosphoproteomics to compare the global changes in phosphopeptides and phosphoproteins in 2kinm mutant Arabidopsis (SnRK1.

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