Publications by authors named "Xiao- Yu He"

Background: Epilepsy, as a chronic noncommunicable disease with recurrent seizures, may be a marker of deterioration or alteration in other underlying neurological diseases. This study aimed to investigate the relationship of epilepsy with brain function, other common brain disorders, and their underlying mechanisms.

Methods: The study was based on clinical diagnostic and test data from 426,527 participants in the UK Biobank, of whom 3,251 were diagnosed with epilepsy at baseline.

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This editorial discusses an article recently published in the , focusing on risk factors associated with intensive care unit-acquired weakness (ICU-AW). ICU-AW is a serious neuromuscular complication seen in critically ill patients, characterized by muscle dysfunction, weakness, and sensory impairments. Post-discharge, patients may encounter various obstacles impacting their quality of life.

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Pathophysiological evolutions in early-stage Alzheimer's disease (AD) are not well understood. We used data of 2923 Olink plasma proteins from 51,296 non-demented middle-aged adults. During a follow-up of 15 years, 689 incident AD cases occurred.

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  • Previous studies on depression focused mainly on common genetic variants, but this research uses whole-exome sequencing to explore rare coding variants and their effects on depression.
  • A large-scale study involving 296,199 UK Biobank participants found 22 genes linked to depressive symptoms, including six new ones (TRIM27, UBD, SVOP, ADGRB2, IRF2BPL, and ANKRD12).
  • The study revealed that these genes are connected to immune responses and regions of the brain tied to depression, offering new insights into the genetic factors and mechanisms behind depressive symptoms.
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The etiology of rheumatoid arthritis (RA), a chronic inflammatory systemic disease, remains unclear. It is characterized by symmetrical and invasive joint inflammation, primarily affecting distal small joints such as those in the hands and feet. This inflammation can lead to joint deformity and loss of function, and often accompanied by involvement of extra-articular organs like the lungs and heart.

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Proteomic alterations preceding the onset of depression offer valuable insights into its development and potential interventions. Leveraging data from 46,165 UK Biobank participants and 2920 plasma proteins profiled at baseline, we conducted a longitudinal analysis with a median follow-up of 14.5 years to explore the relationship between plasma proteins and incident depression.

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Background: The clinical response rate to immune checkpoint blockade (ICB) therapy in melanoma remains low, despite its widespread use. Circular non-coding RNAs (circRNAs) are known to play a crucial role in cancer progression and may be a key factor limiting the effectiveness of ICB treatment.

Methods: The circRNAs that were downregulated after coadministration compared with single administration of PD-1 inhibitor administration were identified through RNA-seq and Ribo-seq, and thus the circPIAS1 (mmu_circ_0015773 in mouse, has_circ_0008378 in human) with high protein coding potential was revealed.

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  • A new catalytic method using Ruthenium (Ru) has been developed to create 3-glycosyl isocoumarins and 2-glycosyl-4-chromen-4-ones.
  • This process involves the reaction of benzoic acid derivatives and 2-hydroxybenzaldehyde with carbonyl sulfoxonium ylide glycogen under mild conditions, yielding high-value glycosides.
  • The reaction demonstrates versatility with diverse substrates and high compatibility with various functional groups, making it useful for large-scale synthesis and modifying complex natural products.
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Respiratory tract infections are the most common triggers for heart failure in elderly people. The healthy respiratory commensal microbiota can prevent invasion by infectious pathogens and decrease the risk of respiratory tract infections. However, upper respiratory tract (URT) microbiome in the elderly is not well understood.

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  • Alzheimer's disease (AD) has complex genetics largely studied in European populations, but this study involved a GWAS with 6,878 Chinese and 63,926 European individuals to explore new genetic links to AD.
  • The research identified three new susceptibility loci (KIAA2013, SLC52A3, and TCN2) in Chinese participants and highlighted a unique variant (rs1815157) within EGFR.
  • The findings suggest that including diverse populations is key for understanding AD's genetic basis and show that high mean corpuscular hemoglobin concentration could offer some protection against the disease.
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  • - The study examined the genetic links of protein-coding variants to immune-mediated diseases (IMDs) by analyzing whole exome sequencing data from over 350,000 UK Biobank participants and discovered 162 unique genes across 35 IMDs, with 124 of those being previously unknown.
  • - Key genes, including FLG associated with atopic dermatitis and asthma, were found to influence both rare and common genetic variants, while 91 genes significantly affected health outcomes over time.
  • - The research also revealed five causal genes that correspond to approved drug targets and highlighted how mutations in certain genes might impact protein expression related to various IMDs, ultimately suggesting new avenues for targeted therapies.
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  • A recent study identified potential new biomarkers for Alzheimer's disease (AD) through an extensive analysis of over 6,300 cerebrospinal fluid proteins from the ADNI database, highlighting YWHAG as a leading candidate for diagnosis.
  • The study demonstrated that combinations of proteins (four or five) significantly improved diagnostic accuracy for AD, showing exceptional performance in distinguishing between AD and non-AD cases.
  • Findings suggest these biomarkers could predict clinical progression to AD dementia and are linked to cognitive decline, with implications for future clinical trials targeting various disease mechanisms.
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  • Varicose veins (VV) are common, and their genetic causes remain unclear, prompting a study using whole-exome sequencing from the UK Biobank.
  • The study identified 36 common genetic variants linked to VV across 34 genes and three rare variants, with PIEZO1 showing the strongest association.
  • Findings suggest that genes related to VV are also connected to factors like body size and inflammation, indicating potential new avenues for treatment.
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Background: Shift work is associated with susceptibility to several neuropsychiatric disorders. This study aims to investigate the effect of shift work on the incidence of neuropsychiatric disorders, and highlighting how individual variability may influence the association.

Methods: UK Biobank participants with employment information were included.

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  • New glyco-reagents based on carbonyl sulfoxonium ylides have been created for synthesizing C-glycosides, which are versatile molecules featuring sugar units.
  • The synthesis process uses a Ru-catalyzed strategy that involves C-H activation/annulation and can handle various types of sugar donors.
  • This advancement allows for more effective stereoselective production of complex heterocyclic C-glycosides and can be applied to large-scale manufacturing or modifications of natural products and pharmaceuticals.
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  • Telomere length is linked to aging and various diseases, but there isn't much data on rare genetic variants influencing it.
  • This study analyzed genetic data from over 390,000 people to identify 18 rare genes associated with leukocyte telomere length (LTL), with three new genes (ASXL1, CFAP58, and TET2) being particularly noteworthy.
  • The findings suggest that specific genetic variants could increase the risk of cancers and age-related diseases, highlighting the importance of telomere length in understanding aging and health outcomes.
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Osteosarcoma (OS), a malignant tumor, originates from the bone marrow. Currently, treatment for OS remains limited, making it urgent to understand the immune response in the tumor microenvironment of patients with OS. A comprehensive bioinformatics analysis was performed, including cell clustering subgroups, differential expression genes screening, proposed temporal order, and genomic variant analysis on single-cell RNA-sequencing data, from ten pre-chemotherapy patients and eleven post-chemotherapy patients.

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While numerous genomic loci have been identified for neuropsychiatric conditions, the contribution of protein-coding variants has yet to be determined. Here we conducted a large-scale whole-exome-sequencing study to interrogate the impact of protein-coding variants on 46 neuropsychiatric diseases and 23 traits in 350,770 adults from the UK Biobank. Twenty new genes were associated with neuropsychiatric diseases through coding variants, among which 16 genes had impacts on the longitudinal risks of diseases.

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Previous genetic studies of venous thromboembolism (VTE) have been largely limited to common variants, leaving the genetic determinants relatively incomplete. We performed an exome-wide association study of VTE among 14,723 cases and 334,315 controls. Fourteen known and four novel genes (SRSF6, PHPT1, CGN, and MAP3K2) were identified through protein-coding variants, with broad replication in the FinnGen cohort.

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Background: Blood-based biomarkers for dementia are gaining attention due to their non-invasive nature and feasibility in regular healthcare settings. Here, we explored the associations between 249 metabolites with all-cause dementia (ACD), Alzheimer's disease (AD), and vascular dementia (VaD) and assessed their predictive potential.

Methods: This study included 274,160 participants from the UK Biobank.

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Sleep is vital for human health and has a moderate heritability. Previous genome-wide association studies have limitations in capturing the role of rare genetic variants in sleep-related traits. Here we conducted a large-scale exome-wide association study of eight sleep-related traits (sleep duration, insomnia symptoms, chronotype, daytime sleepiness, daytime napping, ease of getting up in the morning, snoring and sleep apnoea) among 450,000 participants from UK Biobank.

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The diagnosis of pulmonary alveolar proteinosis (PAP) is based on biopsies. Compared with other methods of taking biopsies, transbronchial lung cryobiopsy (TBLC) has a higher diagnostic rate and the likelihood of pneumothorax. Selective bronchial occlusion (SBO) is an effective technique for treating intractable pneumothorax.

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  • The study analyzes genetic and neuroimaging data from nearly 62,000 participants to understand how genetics influences the shape and size of cerebral ventricles, which are critical for brain health and development.
  • Researchers identified 62 genetic loci and 785 candidate genes associated with ventricular morphology and found a significant overlap with neuropsychiatric traits, highlighting the genetic connections between brain structure and mental health.
  • The findings suggest that measuring the volume of lateral ventricles could serve as a heritable marker for predicting Alzheimer's disease risk, offering insights into the genetic factors involved in both brain development and degenerative processes throughout life.
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The relationship between liver dysfunction and dementia has been researched extensively but remains poorly understood. In this study, we investigate the longitudinal and cross-sectional associations between liver function and liver diseases and risk of incident dementia, impaired cognition, and brain structure abnormalities using Cox proportion hazard model and linear regression model. 431 699 participants with a mean of 8.

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