Publications by authors named "Xiao dong Gao"

Background: Rare sugars are valuable and unique monosaccharides extensively utilized in the food, cosmetics, and pharmaceutical industries. Considering the high purification costs and the complex processes of enzymatic synthesis, whole-cell conversion has emerged as a significantly important alternative. The Escherichia coli strain was initially used in whole-cell synthesis of rare sugars.

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Glycoconjugates, including glycans on proteins and lipids, have obtained significant attention due to their critical roles in both intracellular and intercellular biological functions and processes. Notably, recent discoveries have revealed the presence of glycosylated RNAs (glycoRNAs) on cell surfaces. Despite the well-characterized roles of RNA modifications, RNA glycosylation remains relatively unexplored.

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  • - N-Glycosylation is a key process in modifying proteins, playing a major role in the function of cell surfaces and secreted proteins in humans, influenced by the complexity of N-glycan branches.
  • - The study focuses on enhancing the expression of human N-acetylglucosaminyltransferase-IVa (HsGnT-IVa) in E. coli by creating a shorter, more soluble version of the enzyme, which significantly increased its production levels.
  • - Characterization of the enzyme showed it has optimal activity at 37 °C with specific conditions and activators, providing a method for producing bioactive HsGnT-IVa for further research on complex N-glycans.
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Endo-β-N-acetylglucosaminidases (ENGases) are pivotal enzymes in the degradation and remodeling of glycoproteins, which catalyze the cleavage or formation of β-1,4-glycosidic bond between two N-acetylglucosamine (GlcNAc) residues in N-linked glycan chains. It was investigated that targeted mutations of amino acids in ENGases active site may modulate their hydrolytic and transglycosylation activities. Endo-Tb, the ENGase derived from Trypanosoma brucei, belongs to the glycoside hydrolase family 85 (GH85).

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  • * In studies using cells lacking the MOGS gene (encoding an enzyme important for glycan processing) and components of the CANX/CALR cycle, significant changes were observed in protein expression and glycosylation patterns, particularly affecting oligomannosidic -glycans.
  • * The research revealed that lysosomal hydrolases in the defective cells were poorly modified and improperly secreted, highlighting the important role of the CANX/CALR cycle in
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  • Eukaryotic N-linked glycans are formed on a lipid carrier in the endoplasmic reticulum (ER), starting with the assembly of a fourteen-sugar oligosaccharide on dolichol pyrophosphate.
  • The process includes the addition of seven sugars to dolichol, resulting in an intermediate called Man5GlcNAc2-PP-Dol, which is then transported into the ER lumen.
  • Research identified the protein Rft1 as essential for this transportation, and new experiments confirm that Rft1 directly facilitates the translocation of Man5GlcNAc2-PP-Dol across the lipid bilayer, resolving a long-standing debate about its role.
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  • Cytotoxicity assays are important for testing how effective drugs are at killing cancer cells and understanding their therapeutic value, especially regarding drug concentration effects.
  • This study introduces a novel cytotoxicity assay utilizing microwave sensors to count live cells, offering a new method distinct from traditional fluorescent labeling techniques.
  • The results show that the new microwave biosensor method produced inhibition curves similar to established CCK-8 methods, indicating its effectiveness in measuring the impact of drug concentrations on cell growth inhibition.
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  • Different quantities of white blood cells (WBCs) have similar dielectric properties, making it challenging for traditional microwave sensors to detect their concentration changes in solution.
  • This paper introduces a sensitive microwave biosensor that utilizes evaporation to count WBCs by measuring changes in dielectric properties as the cell solution evaporates on a chip.
  • The biosensor, designed with an air-bridged inductor and capacitor on a GaAs substrate, shows high sensitivity (25.06 Hz/cells·mL) and a linear response, effectively measuring WBC concentrations between 0.25 × 10 and 8 × 10 cells per mL under monitored temperature and humidity conditions.
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  • Cancer antigen 125 (CA125) is a blood marker used to detect ovarian cancer, but its levels can also rise due to non-cancerous conditions, making diagnosis tricky.
  • Researchers engineered cells to express CA125 that carries the Tn antigen, hoping to improve the accuracy of ovarian cancer diagnosis.
  • They achieved this by knocking out specific genes in kidney cells to increase Tn antigen levels, using a system to anchor CA125 to the cell surface, and ultimately converting it to a form that can be secreted for better detection.
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  • Acidic lipases, like LIPR from Rasamsonia emersonii, have valuable applications in the food, feed, and pharmaceutical industries but face challenges in availability and expression levels.
  • Researchers successfully improved LIPR production by using a combination of gene optimization techniques in the yeast Pichia pastoris, resulting in significantly enhanced enzyme activity during fermentation.
  • LIPR is most active at 40°C and pH 4.0, showing potential for biodiesel production and better lipid digestion in the stomach compared to the intestine, although it can be inhibited by certain bile salts.
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  • Colorectal cancer liver metastasis (CRLM) and hepatocellular carcinoma (HCC) present diagnostic challenges due to their similar characteristics, particularly in poorly differentiated cases.
  • A new protein analysis method using paraffin-embedded tissue slides was developed, coupled with machine learning to create predictive models for distinguishing CRLM from HCC.
  • The study identified specific proteins that could effectively differentiate the two cancers, achieving high accuracy scores and suggesting this approach could enhance tumor diagnosis and identify new markers in clinical settings.
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  • * High-resolution mass spectrometry analysis of MEVs from bovine, caprine, porcine, and human sources showed abundant and diverse glycosylation patterns, with sialic acid-modified N-linked glycans making up more than 50% of the glycans present.
  • * The study identified species-specific glycan markers, particularly Neu5Gc-modified glycans enriched in caprine MEVs, and revealed significant differences in the glycosyl
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  • The study focused on understanding SCN5A-related cardiomyopathies by creating ventricular cardiomyocytes from stem cells of a dilated cardiomyopathy patient with the R222Q mutation.
  • Using heart-on-a-chip biowires, researchers found that the R222Q mutation led to arrhythmias, altered sodium channel properties, and decreased heart muscle contractility compared to controls.
  • RNA sequencing revealed significant differences in gene regulation affecting calcium handling and sarcomere structure, highlighting the mutation's impact on both cardiac electrical activity and mechanical stability.
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In human cells, there are more than 146 glycosylphosphatidylinositol-anchored proteins (GPI-APs), including receptors, ligands, adhesion molecules and enzymes. The proteins are associated with membrane microdomains called lipid rafts through GPI, and plays a variety of important biological functions. At present, plenty of studies have been carried out on the biosynthesis of GPI-APs.

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  • Human lysozyme (hLYZ) is gaining traction as an antibacterial agent for food and pharmaceutical use, but sourcing it is restricted.* -
  • Researchers achieved enhanced production of hLYZ in the yeast Pichia pastoris through strategies like optimizing signal sequences and disrupting vacuolar sorting receptors, reaching enzyme activity levels significantly higher than previous strains.* -
  • Their method not only increased yield to 352,000 U/mL using a specialized medium but also presents a cost-effective way to produce hLYZ and could benefit the production of other recombinant proteins.*
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In humans, almost all the cell surface and secreted glycoproteins are modified with complex-type N-glycans. Thus, it is essential to obtain complex-type N-glycans to fully understand the biological properties of glycoproteins. Here, human β-1,2-N-acetylglucosaminyltransferase II (hGnT-II), a Golgi-localized enzyme integral to complex-type N-glycan biosynthesis, was cloned as a truncated transmembrane form (GnT-II-ΔTM) and heterologously overexpressed in Escherichia coli.

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Protein modification by glycosylphosphatidylinositol (GPI) takes place in the endoplasmic reticulum (ER). GPI-anchored proteins (GPI-APs) formed in the ER are transported to the cell surface through the Golgi apparatus. During transport, the GPI-anchor structure is processed.

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  • Congenital disorders of glycosylation (CDGs) are complex genetic diseases linked to issues in glycan production, making diagnosis difficult due to their varied symptoms.
  • Recent research focused on developing a liposome-based vaccine that includes specific biomarkers for ALG1-CDG and PMM2-CDG, enhancing immune responses and promoting the production of high-affinity IgG antibodies.
  • The study found that the new vaccine platform effectively generated strong IgG responses targeted at CDG biomarkers, indicating potential for rapid diagnostic methods for these disorders.
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  • * The study introduces a '3C' strategy using a modified form of the drug lentinan (LNT) incorporated into a material called polylactic acid, which allows for controlled release of the drug.
  • * Results showed that this LNT@Mic combination reprogrammed the tumor environment to enhance antitumor effects and improved the efficacy of other cancer therapies, suggesting a new direction for cancer immunotherapy.
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  • The spore wall features a ridged structure, which is distinct from the dityrosine layer, an outer layer resistant to protease digestion.
  • Proteomic analysis reveals that hydrophilin proteins, including Sip18 and Hsp12, are crucial for maintaining the structure and function of the spore wall, as mutants lacking these proteins show defects.
  • RNA fragments attached to the spore wall, dependent on these proteins, help protect the spores from environmental stresses.
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The emerging importance of the Siglec-sialic acid axis in human disease, especially cancer, has necessitated the identification of ligands for Siglecs. Recombinant Siglec-Fc fusion proteins have been widely used as ligand detectors, and also as sialic acid-targeted antibody-like proteins for cancer treatment. However, the heterogenetic properties of the Siglec-Fc fusion proteins prepared from various expression systems have not been fully elucidated.

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  • Breast cancer is a prevalent disease, with invasive ductal carcinoma (IDC) and invasive lobular carcinoma (ILC) being the two main types; the study investigates their molecular characteristics within the luminal A subgroup using proteomics techniques.
  • Researchers analyzed paired cancer and noncancerous tissues from IDC and ILC patients, identifying over 5,000 proteins and their phosphorylated forms to determine differences in expression and activation of specific kinases.
  • The findings revealed that ILC has higher protein phosphorylation levels, distinct patterns in protein expression between IDC and ILC, and different pathway activations, which may help in understanding the biology of these breast cancer subtypes.
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Rare sugars are monosaccharides with low natural abundance. They are structural isomers of dietary sugars, but hardly be metabolized. Here, we report that rare sugar L-sorbose induces apoptosis in various cancer cells.

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We previously reported that glycosylphosphatidylinositol (GPI) biosynthesis is upregulated when endoplasmic reticulum-associated degradation (ERAD) is defective; however, the underlying mechanistic basis remains unclear. Based on a genome-wide CRISPR-Cas9 screen, we show that a widely expressed GPI-anchored protein CD55 precursor and ER-resident ARV1 are involved in upregulation of GPI biosynthesis under ERAD-deficient conditions. In cells defective in GPI transamidase, GPI-anchored protein precursors fail to obtain GPI, with the remaining uncleaved GPI-attachment signal at the C-termini.

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  • The study focuses on the second step of lipid-linked oligosaccharide biosynthesis, which is catalyzed by the ALG13/ALG14 enzyme complex, crucial for proper glycosylation in humans.
  • Mutations in either ALG13 or ALG14 can lead to serious neurological disorders known as ALG13/14-CDG, but the relationship between these mutations and disease symptoms has not been fully understood due to a lack of effective assays.
  • The researchers developed a new liquid chromatography/mass spectrometry-based assay that reveals only the shorter ALG13 isoform 2 forms a functional complex with ALG14, and established that GnTase deficiency directly contributes to the observed phenotypes in ALG13/14-CDG disorders.
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