Generalizability of polygenic prediction models: how is the R defined on test data?

Background: Polygenic risk scores (PRS) quantify an individual's genetic predisposition for different traits and are expected to play an increasingly important role in personalized medicine. A crucial challenge in clinical practice is the generalizability and transferability of PRS models to populations with different ancestries. When assessing the generalizability of PRS models for continuous traits, the is a commonly used measure to evaluate prediction accuracy.

Estimating the course of the COVID-19 pandemic in Germany via spline-based hierarchical modelling of death counts.

We consider a retrospective modelling approach for estimating effective reproduction numbers based on death counts during the first year of the COVID-19 pandemic in Germany. The proposed Bayesian hierarchical model incorporates splines to estimate reproduction numbers flexibly over time while adjusting for varying effective infection fatality rates. The approach also provides estimates of dark figures regarding undetected infections.

Estimating effective infection fatality rates during the course of the COVID-19 pandemic in Germany.

Background: The infection fatality rate (IFR) of the Coronavirus Disease 2019 (COVID-19) is one of the most discussed figures in the context of this pandemic. In contrast to the case fatality rate (CFR), the IFR depends on the total number of infected individuals - not just on the number of confirmed cases. In order to estimate the IFR, several seroprevalence studies have been or are currently conducted.

Feeding feedlot steers fish oil alters the fatty acid composition of adipose and muscle tissue.

Sixteen steers (441±31.7kg initial body weight) consumed two high concentrate diets with either 0 or 3% fish oil to determine the impact of fish oil, an omega-3 fatty acid source, on the fatty acid composition of beef carcasses. Collected tissue samples included the Longissimus thoracis from the 6th to 7th rib section, ground 10th to 12th rib, liver, subcutaneous adipose tissue adjacent to the 12th rib, intramuscular adipose tissue in the 6th to 7th rib sections, perirenal adipose tissue, and brisket adipose tissue.

Treadmill exercise is not an effective methodology for producing the dark-cutting condition in young cattle.

Holstein steer calves (n = 25) were used to evaluate the effects of treadmill exercise (TME) on blood metabolite status and formation of dark-cutting beef. Calves were blocked by BW (156 +/- 33.2 kg) and assigned randomly within blocks to 1 of 5 TME treatments arranged in a 2 x 2 factorial design (4 or 8 km/h for a duration of 10 or 15 min) with a nonexercised control.

Effects of adding poultry fat in the finishing diet of steers on performance, carcass characteristics, sensory traits, and fatty acid profiles.

Use of poultry fat in the finishing diets of steers has not been studied as a potential source of added energy. Therefore, 60 Angus crossbred steers were fed 1 of 3 dietary treatments consisting of 1) a corn-soybean meal control diet devoid of added fat; 2) the control diet formulated with 4% tallow; or 3) the control diet formulated with 4% poultry fat. Addition of fat did not (P = 0.

Influence of fish oil in finishing diets on growth performance, carcass characteristics, and sensory evaluation of cattle.

Inclusion of fish oil, a source of n-3 fatty acids, in ruminant diets may fortify the fatty acid composition of meats and alter consumer perceptions of taste. Therefore, a 70-d study of 16 crossbred steers (441 +/- 31.7 kg of initial BW; 4 steers/pen; 2 pens/dietary treatment) consuming a high concentrate diet was conducted.

Effects of dietary magnesium and short-duration transportation on stress response, postmortem muscle metabolism, and meat quality of finishing swine.

Crossbred pigs, heterozygous for the halothane gene, were used to determine the effects of long-term dietary supplementation of magnesium mica (MM) and short-duration transportation stress on performance, stress response, postmortem metabolism, and pork quality. Pigs were blocked by weight, penned in groups (six pigs per pen), and pens (three pens per diet) were assigned randomly either to a control corn-soybean meal diet or the control diet supplemented with 2.5% MM (as-fed basis; supplemented at the expense of corn).

Duration of restraint and isolation stress as a model to study the dark-cutting condition in cattle.

Holstein steer calves (n = 32; 156 +/- 33.2 kg average BW) were used to evaluate the duration of restraint and isolation stress (RIS) on endocrine and blood metabolite status and the incidence of dark-cutting LM. Calves were blocked by BW and assigned randomly within blocks to one of four stressor treatments: unstressed controls (NS) or a single bout of RIS for 2, 4, or 6 h.

Influence of fish oil supplementation on growth and immune system characteristics of cattle.

A study was conducted to determine the effects of supplemental fish oil on growth performance and immune system characteristics of beef calves. The grazing phase (78 d) used 48 yearling crossbred steers (231 +/- 22 kg initial BW) grazing 0.45-ha mixed-grass pastures (four per treatment) supplemented with 1.

Dietary supplementation with phosphorylated mannans improves growth response and modulates immune function of weanling pigs.

Phosphorylated mannans derived from the yeast cell wall of Saccharomyces cerevisiae may beneficially modulate immune function in the weanling pig, possibly providing an alternative to the use of dietary growth-promoting antibiotics. Therefore, in this study, 32 pigs averaging 19 d of age and 5.7 +/- 0.

The reaction of permanganyl chloride with olefins: intermediates and mechanism as derived from matrix-isolation studies and density functional theory calculations.

Density functional theory (DFT) calculations predict that the [2+3] addition of tetramethylethylene (TME) to the MnO2 moiety of MnO3Cl is thermodynamically favoured over [2+1] addition (epoxidation), while the kinetic barriers for both reactions are of comparable height. However, in an experimental investigation of the TME/MnO3Cl system by means of matrix-isolation techniques, selective formation of the epoxidation product [ClO2Mn[O[C(CH3)2]2]] (1) was observed. Compound 1 was characterised by IR spectroscopy with the aid of isotopic-enrich-ment experiments in combination with DFT frequency calculations.

Trapping of an Organic Radical by an O=Cr(VI) Function.

Not only capable of generating organic radicals by H abstraction, chromyl chloride can also trap them again (see scheme). This is confirmed by the crystal structure of a Cr(V) oxo alkoxide, which was formed in three successive steps when bisadamantylidene oxide was allowed to react with CrO(2)Cl(2).