mockrobiota: a Public Resource for Microbiome Bioinformatics Benchmarking.

Mock communities are an important tool for validating, optimizing, and comparing bioinformatics methods for microbial community analysis. We present mockrobiota, a public resource for sharing, validating, and documenting mock community data resources, available at http://caporaso-lab.github.

Stable isotope probing with O-water to investigate microbial growth and death in environmental samples.

Growth and mortality of microorganisms have been characterized through DNA stable isotope probing (SIP) with O-water in soils from a range of ecosystems. Conventional SIP has been improved by sequencing a marker gene in all fractions retrieved from an ultracentrifuge tube to produce taxon density curves, which allow estimating the atom percent isotope composition of each microbial taxon's genome. Very recent advances in SIP with O-water include expansion of the technique to aquatic samples, investigations of microbial turnover in soil, and the first use of O-water in RNA-SIP studies.