Synergistic pectin deconstruction is a prerequisite for mutualistic interactions between honeybee gut bacteria.

The honeybee gut microbiome is crucial for degrading diverse pollen glycans. Yet it is unclear how this process shapes the interactions among bacteria. Here, we demonstrate a conditional mutualistic interaction between strains of two honeybee gut bacteria Bifidobacterium asteroides and Gilliamella apicola.

Data-driven prediction of colonization outcomes for complex microbial communities.

Microbial interactions can lead to different colonization outcomes of exogenous species, be they pathogenic or beneficial in nature. Predicting the colonization of exogenous species in complex communities remains a fundamental challenge in microbial ecology, mainly due to our limited knowledge of the diverse mechanisms governing microbial dynamics. Here, we propose a data-driven approach independent of any dynamics model to predict colonization outcomes of exogenous species from the baseline compositions of microbial communities.

Data-driven prediction of colonization outcomes for complex microbial communities.

Complex microbial interactions can lead to different colonization outcomes of exogenous species, be they pathogenic or beneficial in nature. Predicting the colonization of exogenous species in complex communities remains a fundamental challenge in microbial ecology, mainly due to our limited knowledge of the diverse physical, biochemical, and ecological processes governing microbial dynamics. Here, we proposed a data-driven approach independent of any dynamics model to predict colonization outcomes of exogenous species from the baseline compositions of microbial communities.

Silica Nanoparticles Promote Apoptosis in Ovarian Granulosa Cells via Autophagy Dysfunction.

Although silica nanoparticles (SNPs) are generally thought to be biocompatible and safe, the adverse effects of SNPs were also reported in previous studies. SNPs cause follicular atresia via the induction of ovarian granulosa cell apoptosis. However, the mechanisms for this phenomenon are not well understood.

Spatial profiling of microbial communities by sequential FISH with error-robust encoding.

Spatial analysis of microbiomes at single cell resolution with high multiplexity and accuracy has remained challenging. Here we present spatial profiling of a microbiome using sequential error-robust fluorescence in situ hybridization (SEER-FISH), a highly multiplexed and accurate imaging method that allows mapping of microbial communities at micron-scale. We show that multiplexity of RNA profiling in microbiomes can be increased significantly by sequential rounds of probe hybridization and dissociation.

Isolation and Characterization of Phosphorus Solubilizing Bacteria With Multiple Phosphorus Sources Utilizing Capability and Their Potential for Lead Immobilization in Soil.

Phosphorus solubilizing bacteria (PSB) can promote the level of plant-absorbable phosphorus (P) in agro-ecosystems. However, little attention has been paid to PSB harboring abilities in utilizing multiple phosphorus sources and their potentials for heavy metal immobilization. In this study, we applied the strategy of stepwise acclimation by using Ca(PO), phytate, FePO, and AlPO as sole P source.

Dynamic motility selection drives population segregation in a bacterial swarm.

Population expansion in space, or range expansion, is widespread in nature and in clinical settings. Space competition among heterogeneous subpopulations during range expansion is essential to population ecology, and it may involve the interplay of multiple factors, primarily growth and motility of individuals. Structured microbial communities provide model systems to study space competition during range expansion.

Alkaline phosphatase-harboring bacterial community and multiple enzyme activity contribute to phosphorus transformation during vegetable waste and chicken manure composting.

The objective of this study was to evaluate changes in phosphorus fractions during vegetable waste and chicken manure composting. High throughput sequencing, quantitative PCR, and multiple analysis methods were applied to investigate interconnections among phosphorus fractions, enzyme activity, and phoD-harboring bacterial community composition. We found the highest composting temperature reached 61 °C and phosphorus fractions presented significant differences during a 60-day composting.

Responses of the rhizosphere bacterial community in acidic crop soil to pH: Changes in diversity, composition, interaction, and function.

Soil pH is an important predictor of bacterial community composition and diversity. Examining the effects of pH on diversity, structure, interaction, and function of rhizosphere bacterial communities in acidic crop soils provide valuable information for knowing potential role of rhizosphere bacteria in crop yield. Here, we collected soils from artificial greenhouses and applied Illumina Miseq sequencing, quantitative PCR techniques, multiple ecological analysis methods, including topological analysis and functional profiling to analyze our data and validate our hypotheses.

Resonant frequency and damping of a coupled resonant system measured by apparent dissipation factor frequency spectra.

This paper proposes a novel scheme to study the resonance of a vibration mode of a complex system by investigating the apparent dissipation factor frequency spectrum (ADFFS) of another coupled vibration mode. We demonstrate that the resonant absorption peak in ADFFS of one vibration mode is proportional to the displacement amplitude square of another coupled vibration mode from both energy dissipation and dynamics. Two coupled micro-cantilevers are experimentally shown that the ADFFS of one micro-cantilever could be applied to obtain the resonant frequency and the damping of the other coupled micro-cantilever.