J Chem Theory Comput
May 2020
Determining conical intersection geometries is of key importance to understanding the photochemical reactivity of molecules. While many small- to medium-sized molecules can be treated accurately using multireference approaches, larger molecules require a less computationally demanding approach. In this work, minimum energy crossing point conical intersection geometries for a series of molecules have been studied using spin-flip TDDFT (SF-TDDFT), within the Tamm-Dancoff Approximation, both with and without explicit calculation of nonadiabatic coupling terms, and compared with both XMS-CASPT2 and CASSCF calculated geometries.
View Article and Find Full Text PDFThere is high demand for new methods to modify peptides, for application in drug discovery and biomedicine. A C-H functionalization protocol for the olefination of tryptophan residues in peptides is described. The modification is successful for Trp residues at any position in the peptide, has broad scope in the styrene coupling partner, and offers opportunities for conjugating peptides with other biomolecules.
View Article and Find Full Text PDFNew methods for peptide modification are in high demand in drug discovery, chemical biology, and materials chemistry; methods that modify natural peptides are particularly attractive. A Pd-catalyzed, C-H functionalization protocol for the olefination of phenylalanine residues in peptides is reported, which is compatible with common amino acid protecting groups, and the scope of the styrene reaction partner is broad. Bidentate coordination of the peptide to the catalyst appears crucial for the success of the reaction.
View Article and Find Full Text PDFThe pyridylimine-substituted 1-naphthalenes, 2-(1-C10H7)-6-{CR[double bond, length as m-dash]N(2,6-i-Pr2C6H3)}C5H3N (R = Me HLMe, H HLH), react with Na2[PdCl4] in acetic acid at elevated temperature to afford either ortho-C-Hnaphthyl activated (LMe)PdCl (2ortho) or the unactivated adduct (HLH)PdCl2 (1b). Alternatively, 1b and its ketimine analogue (HLMe)PdCl2 (1a), can be prepared by treating (MeCN)2PdCl2 with either HLMe or HLH in chloroform at room temperature. Regio-selective ortho-C-H activation to form 2ortho can also be initiated by the thermolysis of 1a in acetic acid, while no reaction occurs under similar conditions with 1b.
View Article and Find Full Text PDFThe 2-(2′-aniline)-6-imine-pyridines, 2-(C6H4-2′-NH2)-6-(CMe=NAr)C5H3N (Ar = 4-i-PrC6H4 (HL1a), 2,6-i-Pr2C6H3 (HL1b)), have been synthesised via sequential Stille cross-coupling, deprotection and condensation steps from 6-tributylstannyl-2-(2-methyl-1,3-dioxolan-2-yl)pyridine and 2-bromonitrobenzene. The palladium(II) acetate N,N,N-pincer complexes, [{2-(C6H4-2′-NH)-6-(CMe=NAr)C5H3N}Pd(OAc)] (Ar = 4-i-PrC6H4 (1a), 2,6-i-Pr2C6H3 (1b)), can be prepared by reacting HL1 with Pd(OAc)2 or, in the case of 1a, more conveniently by the template reaction of ketone 2-(C6H4-2′-NH2)-6-(CMe=O)C5H3N, Pd(OAc)2 and 4-isopropylaniline; ready conversion of 1 to their chloride analogues, [{2-(C6H4-2′-NH)-6-(CMe=NAr)C5H3N}PdCl] (Ar = 4-i-PrC6H4 (2a), 2,6-i-Pr2C6H3 (2b)), has been demonstrated. The phenyl-containing complexes, [{2-(C6H4-2′-NH)-6-(CMe=NAr)C5H3N}PdPh] (Ar = 4-i-PrC6H4 (3a), 2,6-i-Pr2C6H3 (3b)), can be obtained by treating HL1 with (PPh3)2PdPh(Br) in the presence of NaH or with regard to 3a, by the salt elimination reaction of 2a with phenyllithium.
View Article and Find Full Text PDFThe syntheses of two families of sterically tuneable O,N,N pro-ligands are reported, namely the 2-(phenyl-2'-ol)-6-imine-pyridines, 2-(C6H4-2'-OH),6-(CMe=NAr)C5H3N [Ar = 4-i-PrC6H4 (HL1(a)), 2,6-i-Pr2C6H3 (HL1(b))] and the 2-(phenyl-2'-ol)-6-(amino-prop-2-yl)pyridines, 2-(C6H4-2'-OH),6-(CMe2NHAr)C5H3N [Ar = 4-i-PrC6H4 (HL2(a)), 2,6-i-Pr2C6H3 (HL2(b))], using straightforward synthetic approaches and in reasonable overall yields. Interaction of HL1(a/c) and HL2(a/b) with palladium(II) acetate affords the O,N,N-pincer complexes, [{2-(C6H4-2'-O)-6-(CMe=NAr)C5H3N}Pd(OAc)] (Ar = 4-i-PrC6H4 (1a), 2,6-i-Pr2C6H3 (1b)) and [{2-(C6H4-2'-O)-6-(CMe2NHAr)C5H3N}Pd(OAc)] (Ar = 4-i-PrC6H4 (2a), 2,6-i-Pr2C6H3 (2b)), which can be readily converted to their chloride derivatives, [{2-(C6H4-2'-O)-6-(CMe=NAr)C5H3N}PdCl] (Ar = 4-i-PrC6H4 (3a), 2,6-i-Pr2C6H3 (3b)) and [{2-(C6H4-2'-O)-6-(CMe2NHAr)C5H3N}PdCl] (Ar = 4-i-PrC6H4 (4a), 2,6-i-Pr2C6H3 (4b)), respectively, on reaction with an aqueous sodium chloride solution. Treating each of 3a, 3b, 4a and 4b with two equivalents of di-p-tolyliodonium triflate at 100 °C in a toluene/acetonitrile mixture affords varying amounts of 4-chlorotoluene along with the 4-iodotoluene by-product with the conversions highly dependent on the steric and backbone properties of the pincer complex employed (viz.
View Article and Find Full Text PDFN-Ylide complexes of Ir have been generated by C(sp(3))-H activation of α-pyridinium or α-imidazolium esters in reactions with [Cp*IrCl2]2 and NaOAc. These reactions are rare examples of C(sp(3))-H activation without a covalent directing group, which-even more unusually-occur α to a carbonyl group. For the reaction of the α-imidazolium ester [3H]Cl, the site selectivity of C-H activation could be controlled by the choice of metal and ligand: with [Cp*IrCl2]2 and NaOAc, C(sp(3))-H activation gave the N-ylide complex 4; in contrast, with Ag2O followed by [Cp*IrCl2]2, C(sp(2))-H activation gave the N-heterocyclic carbene complex 5.
View Article and Find Full Text PDFDetailed experimental and computational studies are reported on the mechanism of the coupling of alkynes with 3-arylpyrazoles at [Rh(MeCN)3Cp*][PF6]2 and [RuCl2(p-cymene)]2 catalysts. Density functional theory (DFT) calculations indicate a mechanism involving sequential N-H and C-H bond activation, HOAc/alkyne exchange, migratory insertion, and C-N reductive coupling. For rhodium, C-H bond activation is a two-step process comprising κ(2)-κ(1) displacement of acetate to give an agostic intermediate which then undergoes C-H bond cleavage via proton transfer to acetate.
View Article and Find Full Text PDFThe 2-(3-biphenyl-2-ol)-6-iminepyridines, 2-(3-C12H8-2-OH)-6-(CH=NAr)C5H3N (Ar = 2,6-i-Pr2C6H3 (L1a-H), 2,4,6-Me3C6H2 (L1b-H)), have been prepared in high yield via sequential Suzuki coupling, deprotection and condensation reactions from 2-methoxybiphenyl-3-ylboronic acid and 2-bromo-6-formylpyridine. Treatment of L1-H with Pd(OAc)2 or (MeCN)2PdCl2 results in deprotonation of L1-H to afford the discrete square planar ONN-chelates, [{2-(3-C12H8-2-O)-6-(CHNAr)C5H3N}Pd(OAc)] (Ar = 2,6-i-Pr2C6H3 (1a), 2,4,6-Me3C6H2 (1b)) and [{2-(3-C12H8-2-O)-6-(CH=NAr)C5H3N}PdCl] (Ar = 2,6-i-Pr2C6H3 (2a), 2,4,6-Me3C6H2 (2b)), in good yield, respectively; conversion of 1 to 2 using aqueous sodium chloride has been demonstrated. Selective reduction of the imino unit in L1-H with LiAlH4 proceeds smoothly to yield the 2-(3-biphenyl-2-ol)-6-(methylamine)pyridines, 2-(3-C12H8-2-OH)-6-(CH2-NHAr)C5H3N (Ar = 2,6-i-Pr2C6H3 (L2a-H), 2,4,6-Me3C6H2 (L2b-H)), which on reaction with Pd(OAc)2 give [{2-(3-C12H8-2-O)-6-(CH2-NHAr)C5H3N}Pd(OAc)] (Ar = 2,6-i-Pr2C6H3 (3a), 2,4,6-Me3C6H2 (3b)).
View Article and Find Full Text PDFBidentate N,N-pyridylimine or N,N-pyridylamine donors are effective chelating ligands for regiospecific C-H activation at the peri-(C(8))-position of a naphthyl ring on reaction with palladium(ii) acetate; DFT calculations show N,N-chelates bias the cyclopalladation towards 6-membered ring products.
View Article and Find Full Text PDFChelating amine and amido complexes of late transition metals are highly valuable bifunctional catalysts in organic synthesis, but complexes of bidentate amine-NHC and amido-NHC ligands are scarce. Hence, we report the reactions of a secondary-amine functionalised imidazolium salt 2a and a primary-amine functionalised imidazolium salt 2b with [(p-cymene)RuCl(2)](2) and [Cp*MCl(2)](2) (M = Rh, Ir). Treating 2a with [Cp*MCl(2)](2) and NaOAc gave the cyclometallated compounds Cp*M(C,C)I (M = Rh, 3; M = Ir, 4), resulting from aromatic C-H activation.
View Article and Find Full Text PDFActa Crystallogr Sect E Struct Rep Online
June 2011
In the title complex, [PdI(2)(C(24)H(31)N(3))(2)]·2C(6)H(6), the Pd(2+) ion is located on an inversion centre in a slightly distorted square-planar geometry. The angle between the I(2)C(2) square plane and the mean plane of the N-heterocyclic carbene ring is 79.8 (2)°, with I-Pd-C-N torsion angles of -81.
View Article and Find Full Text PDFWith a view to applications in bifunctional catalysis, a modular cross-coupling strategy has been used to prepare amine bis(imidazolium) salts (3a and 3b) and an amine mono(imidazolium) salt (6) as precursors to chelating amido-NHC ligands. Treating the pro-ligands 3 with 3 equivalents of the bulky base KHMDS and Pd(OAc)(2) or PtCl(2)(COD) gave the four amido bis(N-heterocyclic carbene) pincer complexes [CNC-R]M-I [M = Pd (7) or Pt (8); R = i-Pr (a) or n-Bu (b)], including the first examples of platinum complexes of a CNC ligand. The reaction of 7a with AgOTf in pyridine gave the cationic complex {[CNC-i-Pr]Pd-py}OTf (9a).
View Article and Find Full Text PDFThe previously reported complexes [Mo(N(t)Bu)(O)(2,6-Me(2)C(6)H(3)O)(2)(py)] () and [Mo(N(t)Bu)(O)(2,6-(i)Pr(2)C(6)H(3)O)(2)(py)] () have been shown to contain a nucleophilic oxo ligand. The reaction of and tert-butylacetyl chloride gave the novel complex [Mo(N(t)Bu)(2,6-(i)Pr(2)C(6)H(3)O)(2)(O(2)CCH(2)(t)Bu)Cl] () in 63% yield as the product of nucleophilic acyl substitution. Complex undergoes a clean reaction with triflic anhydride to give the novel complex [{Mo(N(t)Bu)(2,6-Me(2)C(6)H(3)O)(2)}(micro-O)(micro-OTf)(2)] () in 75% yield.
View Article and Find Full Text PDFThe novel 16-electron molybdenum oxo-imido bis(aryloxide) complexes [Mo(NtBu)(O)(2,6-Me2C6H3O)2(py)] (1) and [Mo(NtBu)(O)(2,6-iPr2C6H3O)2(py)] (2) have been prepared by the salt elimination reactions of [Mo(NtBu)(O)Cl2(DME)] with the appropriate lithium aryloxide and from the cycloaddition reactions of tert-butyl isocyanate with the appropriate molybdenum dioxo bis(aryloxide) complex [Mo(O)2(OAr)2(py)n]. Complexes 1 and 2 are the first isolable and crystallographically characterized molybdenum oxo-imido aryloxide complexes. The geometry around the metal in complexes 1 and 2 is best described as a distorted trigonal bipyramid, with the imido and pyridine ligands occupying the axial positions and the oxo and aryloxide ligands in the equatorial plane.
View Article and Find Full Text PDFTungsten(VI) oxo-salicylate complexes were prepared in moderate yield (47 to 63%) by the reactions of WOCl4 and two equivalents of either 3-methylsalicylic acid (MesaliH2) or 3,5-di-isopropylsalicylic acid (di-i-PrsaliH2). Performing the reaction in refluxing toluene afforded the two analogous ditungsten complexes 1, [{WO(Mesali)(MesaliH)}2(mu-O)], and 2, [{WO(di-i-Prsali)(di-i-PrsaliH)}2(mu-O)], however in refluxing hexane the mononuclear tungsten complex , [WO(di-i-Prsali)(di-i-PrsaliH)Cl], was isolated. The single crystal X-ray study of revealed a pseudo-octahedral geometry around the tungsten centres.
View Article and Find Full Text PDFAerosol assisted chemical vapour deposition of polyoxotungstate precursors [n-Bu4N]2[W6O19] and [n-Bu4N]4H3[PW11O39] produces films of WO(3 - x) and WO3 on glass substrates; the WO3 films show significant photocatalytic decomposition of a test organic pollutant--stearic acid--when irradiated with either 254 or 365 nm radiation.
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