Publications by authors named "W L Bacon"

The placenta is the critical interface between mother and fetus, and consequently, placental dysfunction underlies many pregnancy complications. Placental formation requires an adequate expansion of trophoblast stem and progenitor cells followed by finely tuned lineage specification events. Here, using single-cell RNA sequencing of mouse trophoblast stem cells during the earliest phases of differentiation, we identify gatekeepers of the stem cell state, notably Nicol1, and uncover unsuspected trajectories of cell lineage diversification as well as regulators of lineage entry points.

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Article Synopsis
  • Traditional hands-on training in bioinformatics often struggles with resource-intensive requirements and management issues for instructors, especially in virtual settings where tracking student progress is challenging.
  • The Training Infrastructure-as-a-Service (TIaaS) was developed to provide user-friendly, efficient training resources specifically for Galaxy-based courses, allowing event organizers to allocate dedicated resources for smoother operations and quick job completion.
  • TIaaS enhances the training experience for both instructors and students by offering a dashboard for monitoring progress and ensuring students can seamlessly continue using Galaxy tools even after the training, with significant usage reported over the past 60 months.
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Single-cell technologies, particularly single-cell RNA sequencing (scRNA-seq) methods, together with associated computational tools and the growing availability of public data resources, are transforming drug discovery and development. New opportunities are emerging in target identification owing to improved disease understanding through cell subtyping, and highly multiplexed functional genomics screens incorporating scRNA-seq are enhancing target credentialling and prioritization. ScRNA-seq is also aiding the selection of relevant preclinical disease models and providing new insights into drug mechanisms of action.

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There is an ongoing explosion of scientific datasets being generated, brought on by recent technological advances in many areas of the natural sciences. As a result, the life sciences have become increasingly computational in nature, and bioinformatics has taken on a central role in research studies. However, basic computational skills, data analysis, and stewardship are still rarely taught in life science educational programs, resulting in a skills gap in many of the researchers tasked with analysing these big datasets.

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