Increasing the impact of medical image computing using community-based open-access hackathons: The NA-MIC and 3D Slicer experience.

The National Alliance for Medical Image Computing (NA-MIC) was launched in 2004 with the goal of investigating and developing an open source software infrastructure for the extraction of information and knowledge from medical images using computational methods. Several leading research and engineering groups participated in this effort that was funded by the US National Institutes of Health through a variety of infrastructure grants. This effort transformed 3D Slicer from an internal, Boston-based, academic research software application into a professionally maintained, robust, open source platform with an international leadership and developer and user communities.

Object segmentation of database images by dual multiscale morphological reconstructions and retrieval applications.

Processing images for specific targets on a large scale has to handle various kinds of contents with regular processing steps. To segment objects in one image, we utilized dual multiScalE Graylevel mOrphological open and close recoNstructions (SEGON) to build a background (BG) gray-level variation mesh, which can help to identify BG and object regions. It was developed from a macroscopic perspective on image BG gray levels and implemented using standard procedures, thus robustly dealing with large-scale database images.

Tractography segmentation using a hierarchical Dirichlet processes mixture model.

In this paper, we propose a new nonparametric Bayesian framework to cluster white matter fiber tracts into bundles using a hierarchical Dirichlet processes mixture (HDPM) model. The number of clusters is automatically learned driven by data with a Dirichlet process (DP) prior instead of being manually specified. After the models of bundles have been learned from training data without supervision, they can be used as priors to cluster/classify fibers of new subjects for comparison across subjects.

Correspondence-free activity analysis and scene modeling in multiple camera views.

We propose a novel approach for activity analysis in multiple synchronized but uncalibrated static camera views. In this paper, we refer to activities as motion patterns of objects, which correspond to paths in far-field scenes. We assume that the topology of cameras is unknown and quite arbitrary, the fields of views covered by these cameras may have no overlap or any amount of overlap, and objects may move on different ground planes.

Tractography segmentation using a hierarchical Dirichlet processes mixture model.

In this paper, we propose a new nonparametric Bayesian framework to cluster white matter fiber tracts into bundles using a hierarchical Dirichlet processes mixture (HDPM) model. The number of clusters is automatically learnt from data with a Dirichlet process (DP) prior instead of being manually specified. After the models of bundles have been learnt from training data without supervision, they can be used as priors to cluster/classify fibers of new subjects.