J Chem Theory Comput
November 2024
Machine learning-based interatomic potentials enable accurate materials simulations on extended time- and length scales. ML potentials based on the atomic cluster expansion (ACE) framework have recently shown promising performance for this purpose. Here, we describe a largely automated computational approach to optimizing hyperparameters for ACE potential models.
View Article and Find Full Text PDFGraphene oxide (GO) materials are widely studied, and yet their atomic-scale structures remain to be fully understood. Here we show that the chemical and configurational space of GO can be rapidly explored by advanced machine-learning methods, combining on-the-fly acceleration for first-principles molecular dynamics with message-passing neural-network potentials. The first step allows for the rapid sampling of chemical structures with very little prior knowledge required; the second step affords state-of-the-art accuracy and predictive power.
View Article and Find Full Text PDFThe structure of amorphous silicon (a-Si) is widely thought of as a fourfold-connected random network, and yet it is defective atoms, with fewer or more than four bonds, that make it particularly interesting. Despite many attempts to explain such "dangling-bond" and "floating-bond" defects, respectively, a unified understanding is still missing. Here, we use advanced computational chemistry methods to reveal the complex structural and energetic landscape of defects in a-Si.
View Article and Find Full Text PDFSilicon-oxygen compounds are among the most important ones in the natural sciences, occurring as building blocks in minerals and being used in semiconductors and catalysis. Beyond the well-known silicon dioxide, there are phases with different stoichiometric composition and nanostructured composites. One of the key challenges in understanding the Si-O system is therefore to accurately account for its nanoscale heterogeneity beyond the length scale of individual atoms.
View Article and Find Full Text PDFAmorphous ice phases are key constituents of water's complex structural landscape. This study investigates the polyamorphic nature of water, focusing on the complexities within low-density amorphous ice (LDA), high-density amorphous ice, and the recently discovered medium-density amorphous ice (MDA). We use rotationally invariant, high-dimensional order parameters to capture a wide spectrum of local symmetries for the characterization of local oxygen environments.
View Article and Find Full Text PDFJ Chem Theory Comput
November 2023
Machine learning (ML) models for molecules and materials commonly rely on a decomposition of the global target quantity into local, atom-centered contributions. This approach is convenient from a computational perspective, enabling large-scale ML-driven simulations with a linear-scaling cost and also allows for the identification and posthoc interpretation of contributions from individual chemical environments and motifs to complicated macroscopic properties. However, even though practical justifications exist for the local decomposition, only the global quantity is rigorously defined.
View Article and Find Full Text PDFAmorphous calcium carbonate is an important precursor for biomineralization in marine organisms. Key outstanding problems include understanding the structure of amorphous calcium carbonate and rationalizing its metastability as an amorphous phase. Here we report high-quality atomistic models of amorphous calcium carbonate generated using state-of-the-art interatomic potentials to help guide fits to X-ray total scattering data.
View Article and Find Full Text PDFElemental antimony (Sb) is regarded as a promising candidate to improve the programming consistency and cycling endurance of phase-change memory and neuro-inspired computing devices. Although bulk amorphous Sb crystallizes spontaneously, the stability of the amorphous form can be greatly increased by reducing the thickness of thin films down to several nanometers, either with or without capping layers. Computational and experimental studies have explained the depressed crystallization kinetics caused by capping and interfacial confinement; however, it is unclear why amorphous Sb thin films remain stable even in the absence of capping layers.
View Article and Find Full Text PDFZeolitic imidazolate frameworks are widely thought of as being analogous to inorganic AB phases. We test the validity of this assumption by comparing simplified and fully atomistic machine-learning models for local environments in ZIFs. Our work addresses the central question to what extent chemical information can be "coarse-grained" in hybrid framework materials.
View Article and Find Full Text PDFMachine learning (ML) methods are of rapidly growing interest for materials modeling, and yet, the use of ML interatomic potentials for new systems is often more demanding than that of established density-functional theory (DFT) packages. Here, we describe computational methodology to combine the CASTEP first-principles simulation software with the on-the-fly fitting and evaluation of ML interatomic potential models. Our approach is based on regular checking against DFT reference data, which provides a direct measure of the accuracy of the evolving ML model.
View Article and Find Full Text PDFMachine-learning (ML)-based interatomic potentials are increasingly popular in material modeling, enabling highly accurate simulations with thousands and millions of atoms. However, the performance of machine-learned potentials depends strongly on the choice of hyperparameters-that is, of those parameters that are set before the model encounters data. This problem is particularly acute where hyperparameters have no intuitive physical interpretation and where the corresponding optimization space is large.
View Article and Find Full Text PDFThe layered crystal structure of Cr Ge Te shows ferromagnetic ordering at the two-dimensional limit, which holds promise for spintronic applications. However, external voltage pulses can trigger amorphization of the material in nanoscale electronic devices, and it is unclear whether the loss of structural ordering leads to a change in magnetic properties. Here, it is demonstrated that Cr Ge Te preserves the spin-polarized nature in the amorphous phase, but undergoes a magnetic transition to a spin glass state below 20 K.
View Article and Find Full Text PDFExascale computers - supercomputers that can perform 10 floating point operations per second - started coming online in 2022: in the United States, Frontier launched as the first public exascale supercomputer and Aurora is due to open soon; OceanLight and Tianhe-3 are operational in China; and JUPITER is due to launch in 2023 in Europe. Supercomputers offer unprecedented opportunities for modelling complex materials. In this Viewpoint, five researchers working on different types of materials discuss the most promising directions in computational materials science.
View Article and Find Full Text PDFMachine learning (ML) approaches enable large-scale atomistic simulations with near-quantum-mechanical accuracy. With the growing availability of these methods, there arises a need for careful validation, particularly for physically agnostic models-that is, for potentials that extract the nature of atomic interactions from reference data. Here, we review the basic principles behind ML potentials and their validation for atomic-scale material modeling.
View Article and Find Full Text PDFAmorphous red phosphorus (a-P) is one of the remaining puzzling cases in the structural chemistry of the elements. Here, we elucidate the structure, stability, and chemical bonding in a-P from first principles, combining machine-learning and density-functional theory (DFT) methods. We show that a-P structures exist with a range of energies slightly higher than those of phosphorus nanorods, to which they are closely related, and that the stability of a-P is linked to the degree of structural relaxation and medium-range order.
View Article and Find Full Text PDFTwo-dimensionally extended amorphous carbon ("amorphous graphene") is a prototype system for disorder in 2D, showing a rich and complex configurational space that is yet to be fully understood. Here we explore the nature of amorphous graphene with an atomistic machine-learning (ML) model. We create structural models by introducing defects into ordered graphene through Monte-Carlo bond switching, defining acceptance criteria using the machine-learned local, atomic energies associated with a defect, as well as the nearest-neighbor (NN) environments.
View Article and Find Full Text PDFJ Chem Phys
September 2022
Machine learning (ML) based interatomic potentials are emerging tools for material simulations, but require a trade-off between accuracy and speed. Here, we show how one can use one ML potential model to train another: we use an accurate, but more computationally expensive model to generate reference data (locations and labels) for a series of much faster potentials. Without the need for quantum-mechanical reference computations at the secondary stage, extensive reference datasets can be easily generated, and we find that this improves the quality of fast potentials with less flexible functional forms.
View Article and Find Full Text PDFWhile metals can be readily processed and reshaped by cold rolling, most bulk inorganic semiconductors are brittle materials that tend to fracture when plastically deformed. Manufacturing thin sheets and foils of inorganic semiconductors is therefore a bottleneck problem, severely restricting their use in flexible electronic applications. It is recently reported that a few single-crystalline 2D van der Waals (vdW) semiconductors, such as InSe, are deformable under compressive stress.
View Article and Find Full Text PDFWith ever-growing numbers of metal-organic framework (MOF) materials being reported, new computational approaches are required for a quantitative understanding of structure-property correlations in MOFs. Here, we show how structural coarse-graining and embedding ("unsupervised learning") schemes can together give new insights into the geometric diversity of MOF structures. Based on a curated data set of 1262 reported experimental structures, we automatically generate coarse-grained and rescaled representations which we couple to a kernel-based similarity metric and to widely used embedding schemes.
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