Cobaltocenium derivatives have shown great potential as components of anion exchange membranes in fuel cells because they exhibit excellent thermal and alkaline stability under operating conditions while allowing for high anion mobility. The properties of the cobaltocenium-anion complexes can be chemically tuned through the substituent groups on the cyclopentadienyl (Cp) rings of the cation CoCp. However, the synthesis and characterization of the full range of possible derivatives are very challenging and time-consuming, and while the computational tools can greatly expedite this process, full screening of the electronic structure at a high level of theory is still computationally intensive.
View Article and Find Full Text PDFThe forthcoming generation of materials, including artificial muscles, recyclable and healable systems, photochromic heterogeneous catalysts, or tailorable supercapacitors, relies on the fundamental concept of rapid switching between two or more discrete forms in the solid state. Herein, we report a breakthrough in the "speed limit" of photochromic molecules on the example of sterically-demanding spiropyran derivatives through their integration within solvent-free confined space, allowing for engineering of the photoresponsive moiety environment and tailoring their photoisomerization rates. The presented conceptual approach realized through construction of the spiropyran environment results in ~1000 times switching enhancement even in the solid state compared to its behavior in solution, setting a record in the field of photochromic compounds.
View Article and Find Full Text PDFPolymers incorporating cobaltocenium groups have received attention as promising components of anion-exchange membranes (AEMs), exhibiting a good balance of chemical stability and high ionic conductivity. In this work, we analyze the hydroxide diffusion in the presence of cobaltocenium cations in an aqueous environment based on the molecular dynamics of model systems confined in one dimension to mimic the AEM channels. In order to describe the proton hopping mechanism, the forces are obtained from the electronic structure computed at the density-functional tight-binding level.
View Article and Find Full Text PDFJ Chem Theory Comput
March 2023
We present a quantum dynamics approach for molecular systems based on wave function factorization into components describing the light and heavy particles, such as electrons and nuclei. The dynamics of the nuclear subsystem can be viewed as motion of the trajectories defined in the nuclear subspace, evolving according to the average nuclear momentum of the full wave function. The probability density flow between the nuclear and electronic subsystems is facilitated by the imaginary potential, derived to ensure a physically meaningful normalization of the electronic wave function for each configuration of the nuclei, and conservation of the probability density associated with each trajectory in the Lagrangian frame of reference.
View Article and Find Full Text PDFNew zwitterionic dirhenium carbonyl complexes containing ammonioethenyl and phosphonioethenyl ligands have been synthesized and studied. The reaction of Re(CO) with CH and MeNO yielded the dirhenium complex Re(CO)(NMe) () and the new zwitterionic complex Re(CO)[η--2-CH═CH(NMe)] (). Compound was characterized structurally and was found to have a NMe ligand in an equatorial coordination site to a long Re-Re single bond, Re-Re = 3.
View Article and Find Full Text PDFUsing a combination of experimental studies, theory, simulation, and modeling, we investigate the hydrogen atom transfer (HAT) reaction by the high-valent ferryl cytochrome P450 (CYP) intermediate known as Compound I, a species that is central to innumerable and important detoxification and biosynthetic reactions. The P450 decarboxylase known as OleT converts fatty acids, a sustainable biological feedstock, into terminal alkenes and thus is of high interest as a potential means to produce fungible biofuels. Previous experimental work has established the intermediacy of Compound I in the C─C scission reaction catalyzed by OleT and an unprecedented ability to monitor the HAT process in the presence of bound fatty acid substrates.
View Article and Find Full Text PDFAn improved understanding of the P450 structure is relevant to the development of biomimetic catalysts and inhibitors for controlled CH-bond activation, an outstanding challenge of synthetic chemistry. Motivated by the experimental findings of an unusually short Fe-S bond of 2.18 Å for the wild-type (WT) OleT P450 decarboxylase relative to a cysteine pocket mutant form (A369P), a computational model that captures the effect of the thiolate axial ligand on the iron-sulfur distance is presented.
View Article and Find Full Text PDFCationic cobaltocenium derivatives are promising components of the anion exchange membranes because of their excellent thermal and alkaline stability under the operating conditions of a fuel cell. Here, we present an efficient modeling approach to assessing the chemical stability of substituted cobaltocenium CoCp, based on the computed electronic structure enhanced by machine learning techniques. Within the aqueous environment, the positive charge of the metal cation is balanced by the hydroxide anion through formation of the CoCpOH complexes, whose dissociation is studied within the implicit solvent employing the density functional theory.
View Article and Find Full Text PDFMetallocenium cations, used as a component in an anion exchange membrane of a fuel cell, demonstrate excellent thermal and alkaline stability, which can be improved by the chemical modification of the cyclopentadienyl rings with substituent groups. In this work, the relation between the bond dissociation energy (BDE) of the cobaltocenium (CoCp) derivatives, used as a measure of the cation stability, and chemistry-informed descriptors obtained from the electronic structural calculations is established. The analysis of 12 molecular descriptors for 118 derivatives reveals a nonlinear dependence of the BDE on the electron donating-withdrawing character of the substituent groups coupled to the energy of the frontier molecular orbitals.
View Article and Find Full Text PDFThis article summarizes technical advances contained in the fifth major release of the Q-Chem quantum chemistry program package, covering developments since 2015. A comprehensive library of exchange-correlation functionals, along with a suite of correlated many-body methods, continues to be a hallmark of the Q-Chem software. The many-body methods include novel variants of both coupled-cluster and configuration-interaction approaches along with methods based on the algebraic diagrammatic construction and variational reduced density-matrix methods.
View Article and Find Full Text PDFA series of molecular rotors was designed to study and measure the rate accelerating effects of an intramolecular hydrogen bond. The rotors form a weak neutral O-H⋯O[double bond, length as m-dash]C hydrogen bond in the planar transition state (TS) of the bond rotation process. The rotational barrier of the hydrogen bonding rotors was dramatically lower (9.
View Article and Find Full Text PDFThe Madelung-de Broglie-Bohm formulation of the Schrödinger equation casts the time-evolution of a wave function as dynamics of an ensemble of quantum, or Bohmian, trajectories, interacting via the nonlocal quantum potential. This trajectory perspective gives insight into the quantumness (or classicality) of a given system due to clear partitioning of the energy into classical and quantum components. Here, we propose a system-independent measure of the quantumness of dynamics, based on the energy time-change, referred to as "quantum power".
View Article and Find Full Text PDFJ Chem Theory Comput
July 2019
The quantum nature of nuclei often affects molecular structure and properties, which are associated with the motion of protons and other light nuclei at low temperature. However, incorporation of the nuclear quantum effects into theoretical studies of large molecular systems is an outstanding challenge in theoretical chemistry. In this paper, the de Broglie-Bohm formulation of the time-dependent Schrödinger equation is used as a framework for the development of approximate quantum corrections to the dynamics of a trajectory ensemble, representing a time-dependent wave function.
View Article and Find Full Text PDFThe relative yields for addition of the OH radical at the various positions of 1- and 2-naphthol provide a measure of the spin polarizability in the naphthols. The observed yields show that addition occurs predominantly at the naphthol positions that are conjugated with the OH substituent. They also show that the electronic structures of the naphthols are significantly affected by a concerted interaction between the OH substituent and the unsubstituted ring and that this effect is somewhat greater when the OH substituent is adjacent to the naphthol bridge.
View Article and Find Full Text PDFThe electronically unsaturated compounds Re(CO)[μ-Au(NHC)](μ-Ph), 1, and Re(CO)[μ-Au(NHC)], 2, were obtained from the reaction of Re(CO)[μ-η-C(H)═C(H)Bu](μ-H) with MeAu(NHC), NHC = 1,3-bis(2,6-diisopropylphenyl)imidazol-2-ylidene. Compound 1 was converted to the new compound Re(CO)[μ-Au(NHC)](μ-H), 3, by reaction with H. Addition of CO to 3 yielded the new compound Re(CO)[Au(NHC)](μ-H), 4, which contains a terminally coordinated Au(NHC) group on one of the rhenium atoms, and the hydrido ligand was shifted to bridge the Re-Au bond.
View Article and Find Full Text PDFThe electronically unsaturated dirhenium complex [Re2(CO)8(μ-H)(μ-Ph)] (1) has been found to exhibit aromatic C-H activation upon reaction with N,N-diethylaniline, naphthalene, and even [D6]benzene to yield the compounds [Re2(CO)8(μ-H)(μ-η(1)-NEt2C6H4)] (2), [Re2(CO)8(μ-H)(μ-η(2)-1,2-C10H7)] (3), and [D6]-1, respectively, in good yields. The mechanism has been elucidated by using DFT computational analyses, and involves a binuclear C-H bond-activation process.
View Article and Find Full Text PDFEvolution with energy dissipation can be used to obtain the ground state of a quantum-mechanical system. This dissipation is introduced in the quantum trajectory framework by adding an empirical friction force to the equations of motion for the trajectories, which, as an ensemble, represent a wave function. The quantum effects in dynamics are incorporated via the quantum force derived from the properties of this ensemble.
View Article and Find Full Text PDFA classical limit of quantum dynamics can be defined by compensation of the quantum potential in the time-dependent Schrödinger equation. The quantum potential is a non-local quantity, defined in the trajectory-based form of the Schrödinger equation, due to Madelung, de Broglie, and Bohm, which formally generates the quantum-mechanical features in dynamics. Selective inclusion of the quantum potential for the degrees of freedom deemed "quantum," defines a hybrid quantum/classical dynamics, appropriate for molecular systems comprised of light and heavy nuclei.
View Article and Find Full Text PDFStrong orthogonality is an important constraint placed on geminal wavefunctions in order to make variational minimization tractable. However, strong orthogonality prevents certain, possibly important, excited configurations from contributing to the ground state description of chemical systems. The presented method lifts strong orthogonality constraint from geminal wavefunction by computing a perturbative-like correction to each geminal independently from the corrections to all other geminals.
View Article and Find Full Text PDFAngew Chem Int Ed Engl
October 2014
The electronically unsaturated dirhenium complex [Re2(CO)8(µ-AuPPh3)(µ-Ph)] (1) was obtained from the reaction of [Re2(CO)8{µ-η(2)-C(H)=C(H)nBu}(µ-H)] with [Au(PPh3)Ph]. The bridging {AuPPh3} group was replaced by a bridging hydrido ligand to yield the unsaturated dirhenium complex [Re2(CO)8(µ-H)(µ-Ph)] (2) by reaction of 1 with HSnPh3. Compound 2 reductively eliminates benzene upon addition of NCMe at 25 °C.
View Article and Find Full Text PDFJ Chem Phys
September 2013
The electron correlation energy in a chemical system is defined as a difference between the energy of an exact energy for a given Hamiltonian, and a mean-field, or single determinant, approximation to it. A promising way to model electron correlation is through the expectation value of a linear two-electron operator for the Kohn-Sham single determinant wavefunction. For practical reasons, it is desirable for such an operator to be universal, i.
View Article and Find Full Text PDFAn appealing way to model electron correlation within the single determinant wave function formalism is through the expectation value of a linear two-electron operator. For practical reasons, it is desirable for such an operator to be universal, i.e.
View Article and Find Full Text PDFAbsorption spectrophotometric and mass spectrometric properties of 1,2-benzoquinone, prepared in aqueous solution by the hexachloroiridate(IV) oxidation of catechol and isolated by HPLC, are reported. Its absorption spectrum has a broad moderately intense band in the near UV with an extinction coefficient of 1370 M(-1)cm(-1) at its 389 nm maximum. The oscillator strength of this band contrasts with those of the order-of-magnitude stronger approximately 250 nm bands of most 1,4-benzoquinones.
View Article and Find Full Text PDFThe concept of the correlation operator, introduced 10 years ago as a possible method to model the electron correlation effects with single determinant wave functions [Rassolov, J. Chem. Phys.
View Article and Find Full Text PDFThe substituted carboxylate compounds N-(3-propanoic acid)-1,8-naphthalimide (HL(C2)) and N-(4-butanoic acid)-1,8-naphthalimide (HL(C3)) react with Cu(2)(O(2)CCH(3))(4)(H(2)O)(2) in the presence of either pyridine (py) or 4,4'-bipyridine (bipy) to produce the dimeric complexes [Cu(2)(L(C2))(4)(py)(2)].2(CH(2)Cl(2)).(CH(3)OH) (1), [Cu(2)(L(C3))(4)(py)(2)].
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