Toward an Understanding of the Pressure Effect on the Intramolecular Vibrational Frequencies of Sulfur Hexafluoride.

The structural and vibrational properties of the molecular units of sulfur hexafluoride crystal as a function of pressure have been studied by the Extreme Pressure Polarizable Continuum Model (XP-PCM) method. Within the XP-PCM model, single molecule calculations allow a consistent interpretation of the experimental measurements when considering the effect of pressure on both the molecular structure and the vibrational normal modes. This peculiar aspect of XP-PCM provides a detailed description of the electronic origin of normal modes variations with pressure, via the curvature of the potential energy surface and via the anharmonicity of the normal modes.

Red lakes from Leonardo's Last Supper and other Old Master Paintings: Micro-Raman spectroscopy of anthraquinone pigments in paint cross-sections.

The analysis of red particles in paint cross-sections from Leonardo da Vinci's Last Supper, Masolino da Panicale's wall painting Beheading of St. John the Baptist in Castiglione Olona, Tintoretto's The Discovery of the Body of Saint Mark and Paolo Veronese's Supper in the House of Simon has been carried out with micro-Raman measurements. Subtracted shifted Raman spectroscopy methods have been employed to resolve the signals in the presence of fluorescence.

Insights on the Realgar Crystal Under Pressure from XP-PCM and Periodic Model Calculations.

The spectroscopic properties of AsS with pressure have been computed by the quantum mechanical XP-PCM method and by density functional theory periodic calculations. The comparison has allowed the interpretation of the available experimental data. By comparison of the two methods and with experiments, we show that the XP-PCM method is able to reproduce the same behavior of the periodic calculations with much lower computational cost allowing to be adopted as a first choice computational tool for a qualitative interpretation of molecular crystals properties under pressure.

XP-PCM Calculations of High Pressure Structural and Vibrational Properties of P4S3.

The structure and the vibrational properties of the P4S3 crystal at high pressures are discussed by application of the XP-PCM method. The vibrational assignment has been clarified. The structure and the electron distribution changes as a function of pressure are analyzed.

Nanostructured Ag platforms as biosensors of nucleobase chains.

Nanostructured Ag platforms have been obtained by simple chemical procedure and characterized by AFM (atomic force microscopy) measurements, for use in biosensing by means of SERS (surface-enhanced Raman scattering) spectroscopy. The SERS efficiency of these substrates has been verified by microRaman measurements on small RNA chains with different nucleobase content, showing sensitivity near attomole level. It is our opinion that these metal substrates may be widely used as appropriate sensors for detecting biomolecules in many applications concerning medical diagnostics, pharmacological research and nanomaterials technology.

SERS, XPS, and DFT Study of Adenine Adsorption on Silver and Gold Surfaces.

The adsorption of adenine on silver and gold surfaces has been investigated combining density functional theory calculations with surface-enhanced Raman scattering and angle-resolved X-ray photoelectron spectroscopy measurements, obtaining useful insight into the orientation and interaction of the nucleobase with the metal surfaces.

Wavelet Transform for Spectroscopic Analysis: Application to Diols in Water.

Wavelet transform has been used to correlate spectroscopic and structural properties from trajectories obtained by ab initio molecular dynamics simulations. This method has been applied to hydrogen bond dynamics of glycols in heavy water solutions, showing how the stretching frequency of the intramolecular O-H bond changes with the intermolecular hydrogen-bond distance. The resulting wavelet spectrograms have been interpreted according to H-bond strength and stability.

Raman and computational study of solvation and chemisorption of thiazole in silver hydrosol.

A SERS investigation combined with ab initio computational analysis involving Car-Parrinello molecular dynamics simulations and Density Functional Theory approach allows fundamental information to be obtained on the behaviour of thiazole in silver aqueous suspension where solvation and chemisorption processes competitively occur.

High-pressure reactivity of clathrate hydrates by two-photon dissociation of water.

It is shown that photoinduced reactions are observed at room temperature and pressure of few tenths of gigapascal in clathrate hydrates of CO and of model hydrocarbons under mild irradiation at 350 nm with power in the 50-610 mW range. The reactions are triggered by highly reactive OH radicals produced by two-photon excitation of the lowest electronic excited state of water having dissociative character. The formation of CO(2) is observed in all the reactions involving carbonaceous clathrate hydrates, and direct or indirect evidence for the formation of molecular hydrogen is obtained.

Nitromethane decomposition under high static pressure.

The room-temperature pressure-induced reaction of nitromethane has been studied by means of infrared spectroscopy in conjunction with ab initio molecular dynamics simulations. The evolution of the IR spectrum during the reaction has been monitored at 32.2 and 35.

High-pressure reactivity of model hydrocarbons driven by near-UV photodissociation of water.

The ambient temperature photoinduced reactivity of mixtures containing water and some of the simplest model hydrocarbons has been studied in a diamond anvil cell below 1 GPa. The near-UV 350 nm emission of an Ar ion laser has been employed to photodissociate water molecules through two-photon absorption processes. The hydroxyl radicals generated through this process are able to trigger a chemical reaction in the mixtures containing ethane and acetylene, which are otherwise stable under the same P-T-hnu conditions, whereas the contribution of water has no effect or is very limited in the case of the ethylene and propene mixtures, respectively.

Solvation dynamics and adsorption on Ag hydrosols of oxazole: a Raman and computational study.

The interactions between oxazole and water or silver nanoparticles in aqueous dispersions have been studied with a computational approach based on ab initio molecular dynamics simulations, with the Car-Parrinello method, and density functional calculations in combination with Raman and surface enhanced Raman scattering (SERS) experiments. The solvation dynamics of oxazole in water allowed for the characterization of the hydrogen bond between water and solute, which has been shown to occur essentially through the nitrogen atom of the heterocyclic molecule. To mimic the solvation process or the adsorption on silver and interpreting the corresponding Raman and SERS spectra in aqueous solution or in Ag hydrosols, density functional calculations have been carried out on model systems made up by oxazole bound to water molecules or to positively charged silver clusters.

Crystalline indole at high pressure: chemical stability, electronic, and vibrational properties.

Vibrational and electronic spectra of crystalline indole were measured up to 25.5 GPa at room temperature in a diamond anvil cell. In particular, Fourier transform infrared (FTIR) spectra in the mid-infrared region and two-photon excitation profiles and fluorescence spectra in the region of the HOMO-LUMO transitions were obtained.

High-pressure photodissociation of water as a tool for hydrogen synthesis and fundamental chemistry.

High-pressure methods have been demonstrated to be efficient in providing new routes for the synthesis of materials of technological interest. In several molecular compounds, the drastic pressure conditions required for spontaneous transformations have been lowered to the kilobar range by photoactivation of the reactions. At these pressures, the syntheses are accessible to large-volume applications and are of interest to bioscience, space, and environmental chemistry.

Anharmonic infrared and Raman spectra in Car-Parrinello molecular dynamics simulations.

The infrared and Raman spectra of naphthalene crystal with inclusion of anharmonic effects have been calculated by adopting the generalized variational density functional perturbation theory in the framework of Car-Parrinello molecular dynamics simulations. The computational approach has been generalized for cells of arbitrary shape. The intermolecular interactions have been analyzed with and without the van der Waals corrections, showing the importance of such interactions in the naphthalene crystal to reproduce the structural, dynamical, and spectroscopic properties.

Role of excited electronic states in the high-pressure amorphization of benzene.

High-pressure methods are increasingly used to produce new dense materials with unusual properties. Increasing efforts to understand the reaction mechanisms at the microscopic level, to set up and optimize synthetic approaches, are currently directed at carbon-based solids. A fundamental, but still unsolved, question concerns how the electronic excited states are involved in the high-pressure reactivity of molecular systems.

Thermodynamics of stacking interactions in proteins.

Using a database of 6166 experimental structures taken from the Protein Data Bank, we have studied pair interactions between planar residues (Phe, Tyr, His, Arg, Glu and Asp) in proteins, known as pi-pi interactions. On the basis of appropriate coordinates defining the mutual arrangement of two residues, we have calculated 2-D potentials of mean force aimed at determining the stability of the most probable structures for aromatic-aromatic, aromatic-cation and aromatic-anion bound pairs. Our analysis reveals the thermodynamic relevance and the ubiquity of stacked complexes in proteins.

Mechanism of the Ethylene Polymerization at Very High Pressure.

The reaction of ethylene in condensed phases under high pressure has been investigated by ab initio molecular dynamics. Both disordered and crystalline samples have been simulated, and some insights on the reaction mechanism have been obtained. System size effects have been investigated for the disordered samples.

Crystal structure of nitromethane up to the reaction threshold pressure.

Angle dispersion X-ray diffraction (AXDX) experiments on nitromethane single crystals and powder were performed at room temperature as a function of pressure up to 19.0 and 27.3 GPa, respectively, in a membrane diamond anvil cell (MDAC).

Ab Initio Molecular Dynamics Study of Mg(2+) and Ca(2+) Ions in Liquid Methanol.

Ab initio Car-Parrinello molecular dynamics simulations have been performed in order to investigate the solvation properties of Mg(2+) and Ca(2+) in fully deuterated methanol solution to better understand polarization effects induced by the ions. Charge transfer and dipole moment calculations have been performed to give more detailed insight on the role of the electronic reorganization and its effect on the first solvation shell stability. The perturbation of the methanol H-bond network has been investigated.

Ab initio molecular dynamics study of the hydrolysis reaction of diborane.

The hydrolysis reaction of the diborane molecule in aqueous solution has been studied by a series of Car-Parrinello Molecular Dynamics simulations in the Blue Moon Ensemble. The total reaction has been divided into two parts: one dealing with the breaking of B(2)H(6) molecule and the formation of a BH(4)(-) ion, a H(2)BOH molecule and a H(+) ion; the second leads to the formation of two hydrogen molecules and another H(2)BOH molecule, starting from BH(4)(-), two water molecules and a H(+) ion. The total reaction studied in this work has been B(2)H(6) + 2H(2)O --> 2H(2)BOH + 2H(2).

Constraining molecules at the closest approach: chemistry at high pressure.

The purpose of this tutorial review is to illustrate the effects that the application of high pressures can have on chemical reactions involving highly compressible molecular materials. The essentials of the high-pressure technology (generation and in situ control of high pressures) are described with particular attention to the versatile diamond anvil cell (DAC) apparatus. The general effects of pressure on chemical equilibrium, reaction rate and reaction mechanism are discussed.

Dimerization and polymerization of isoprene at high pressures.

The high-pressure reactivity of isoprene has been studied at room temperature up to 2.6 GPa by using the diamond anvil cell technique in combination with Fourier transform infrared spectroscopy. Both dimerization and polymerization reactions take place above 1.

Triggering dynamics of the high-pressure benzene amorphization.

Success in designing and tailoring solid-state reactions depends on the knowledge of the mechanisms regulating the reactivity at the microscopic level. In spite of several attempts to rationalize the reactivity of crystals, the question of the existence of a critical distance for a reaction to occur remains unsolved. In this framework, the role of lattice phonons, which continuously tune the relative distance and orientation of the molecules, is still not fully understood.