Action of tannin on cellular membranes: Novel insights from concerted studies on lipid bilayers and native cells.

Hydrolyzable tannin (3,6-bis-O-digalloyl-1,2,4-tri-O-galloyl-β-d-glucose) has a dual effect on the cell membrane: (1) it binds to a plasmalemmal protein of the Chara corallina cell (C = 2.7 ± 0.3 μM) and (2) it forms ionic channels in the lipid membrane.

Investigation of the influence of external factors on the conformational dynamics of rhodopsin-like receptors by means of molecular dynamics simulation.

The study reports about the influence of binding of orthosteric ligands on the conformational dynamics of β-2-adrenoreceptor. Using molecular dynamics (MD) simulation, we found that there was a little fraction of active states of the receptor in its apo (ligand-free) ensemble. Analysis of MD trajectories indicated that such spontaneous activation of the receptor is accompanied by the motion in intracellular part of its alpha-helices.

Transfer RNAs: electrostatic patterns and an early stage of recognition by synthetases and elongation factor EF-Tu.

Distributions of phosphate backbone-produced electrostatic potentials around several tRNAs were calculated by solving the nonlinear Poisson-Boltzmann equation. The tRNAs were either free or bound to the proteins involved in translation: aminoacyl-tRNA and elongation factor EF-Tu. We identified several regions of strong negative potential related to typical structural patterns of tRNA and invariant throughout the tRNAs.