Publications by authors named "Vasiliki Kalatzis"

Article Synopsis
  • Inherited retinal diseases (IRDs) cause people to lose their vision slowly, and there are over 270 genes that can cause these problems.
  • One specific gene, RLBP1, leads to different eye disorders depending on changes in that gene, affecting proteins important for seeing.
  • Researchers created a method to treat these disorders using gene therapy, and they discovered a new form of the CRALBP protein that could help improve treatments in both humans and mice.
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Variants in rhodopsin (RHO) have been linked to autosomal dominant congenital stationary night blindness (adCSNB), which affects the ability to see in dim light, and the pathogenetic mechanism is still not well understood. In this study we report two novel RHO variants found in adCSNB families, p.W265R and p.

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  • X-linked retinitis pigmentosa (XLRP) causes progressive vision loss primarily in males, with carrier females exhibiting a range of severities; about 70% of cases are linked to mutations in the RPGR gene.
  • The terminal exon ORF15 of the RPGR gene is challenging to sequence due to its repetitive nature, complicating molecular diagnostics.
  • A recent study validates a long-read sequencing method that improved detection rates of ORF15 variations to nearly 100% after additional visual inspection, suggesting this approach should be the first screening choice for XLRP cases.
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Retinitis pigmentosa (RP) is the most common inherited retinal disease (IRD) and is characterized by photoreceptor degeneration and progressive vision loss. We report 4 patients presenting with RP from 3 unrelated families with variants in TBC1D32, which to date has never been associated with an IRD. To validate TBC1D32 as a putative RP causative gene, we combined Xenopus in vivo approaches and human induced pluripotent stem cell-derived (iPSC-derived) retinal models.

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There is an emblematic clinical and genetic heterogeneity associated with inherited retinal diseases (IRDs). The most common form is retinitis pigmentosa (RP), a rod-cone dystrophy caused by pathogenic variants in over 80 different genes. Further complexifying diagnosis, different variants in individual RP genes can also alter the clinical phenotype.

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Article Synopsis
  • - DFNA68 is a rare form of hearing impairment caused by specific mutations in the HOMER2 gene, with only 5 known variants reported in families affected by this condition.
  • - A new gene variation (c.1064 A > G) was discovered in a Sicilian family, leading to the production of a longer HOMER2 protein, which was shown to impact hearing negatively.
  • - The research utilized zebrafish models to confirm the harmful effects of this new genetic alteration on hearing, expanding the understanding of DFNA68's genetic basis.
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  • SpliceAI is a powerful algorithm for predicting splicing defects in DNA, but it has drawbacks like difficult-to-interpret outputs, delta scores that can obscure severe issues, and limited handling of complex variations.
  • SpliceAI-visual is a new online tool that addresses these issues by using raw scores, offering a user-friendly graphical output, and being able to analyze complex genetic variants.
  • The tool is accessible as a Google Colab notebook and integrated into the MobiDetails variant interpretation platform, enhancing the assessment of splicing defects and facilitating the understanding of complex cases.
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Several pathogenic variants have been reported in the gene associated with the inherited retinal disorders vitelliform macular dystrophy (VMD) and retinitis pigmentosa (RP). and its paralog encode for two proteoglycans, SPACR and SPACRCAN, respectively, which are the main components of the interphotoreceptor matrix (IPM), the extracellular matrix surrounding the photoreceptor cells. To determine the role of SPACR in the pathological mechanisms leading to RP and VMD, we generated a knockout mouse model lacking , the mouse ortholog.

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Background: Human-induced pluripotent stem cell-derived retinal organoids are a valuable tool for disease modelling and therapeutic development. Many efforts have been made over the last decade to optimise protocols for the generation of organoids that correctly mimic the human retina. Most protocols use common media supplements; however, protocol-dependent variability impacts data interpretation.

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We report here the generation of the human iPSC line INMi005-A from a patient with non-syndromic autosomal recessive retinitis pigmentosa caused by compound heterozygous mutations in the USH2A gene. The reprogramming of primary human dermal fibroblasts was performed using the non-integrative Sendai virus method and the OSKM transcription factor cocktail. The generated INMi005-A iPSC line is pluripotent and genetically stable, and will represent a valuable tool for understanding the pathophysiology associated with USH2A mutations.

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, also known as , is a gene implicated in autosomal dominant nonsyndromic hearing loss (ADNSHL), affecting, at first, the high frequencies with a subsequent progression over all frequencies. To date, all the pathogenic variants associated with deafness lead to skipping of exon 8. In two families with apparent ADNSHL, massively parallel sequencing (MPS) integrating a coverage-based method for detection of copy number variations (CNVs) was applied, and it identified the first two causal structural variants affecting exon 8.

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Article Synopsis
  • - Usher syndrome is an autosomal recessive disorder resulting in hearing loss and retinitis pigmentosa, with three clinical subtypes, primarily influenced by genes specific to types I and II.
  • - A study utilized massively parallel sequencing on 231 patients to confirm diagnoses, uncovering 231 pathogenic genotypes, including 68 novel variants not previously documented.
  • - The findings highlight the ongoing discovery of new genetic variants in Usher syndrome, emphasizing the importance of molecular studies as potential DNA and RNA-based therapies are pursued.
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Pathogenic variants in lead to diverse recessive retinal disorders from severe Leber congenital amaurosis to isolated macular dystrophy. Until recently, no clear phenotype-genotype correlation and no appropriate mouse models existed. Herein, we reappraise the phenotype-genotype correlation of 50 patients with regards to the recently identified isoforms: a canonical long isoform A localized in Müller cells (12 exons) and a short isoform B predominant in photoreceptors (7 exons).

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Article Synopsis
  • Alterations in the TMC1 gene are linked to both dominant and recessive forms of nonsyndromic hearing loss (NSHL), with 117 identified variants so far.
  • In a patient with severe hearing loss, a previously deemed benign variant (c.627C>T) was found to disrupt splicing regulatory elements, suggesting it plays a role in the disease.
  • The study confirms the harmful effects of this variant through functional analysis, emphasizing the need for detailed assessments of genetic variants to determine their pathogenicity.
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Choroideremia is an inherited retinal disease characterised by a degeneration of the light-sensing photoreceptors, supporting retinal pigment epithelium and underlying choroid. Patients present with the same symptoms as those with classic rod-cone dystrophy: (1) night blindness early in life; (2) progressive peripheral visual field loss, and (3) central vision decline with a slow progression to legal blindness. Choroideremia is monogenic and caused by mutations in CHM.

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Purpose: To identify relevant criteria for gene therapy based on clinical and genetic characteristics of rod-cone dystrophy associated with pathogenic variants in a large cohort comprising children and adults.

Design: Retrospective cohort study.

Participants: Patients with pathogenic variants in registered in a single French reference center specialized in inherited retinal dystrophies.

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Retinitis pigmentosa (RP) is an inherited retinal dystrophy that causes progressive vision loss. The G56R mutation in NR2E3 is the second most common mutation causing autosomal dominant (ad) RP, a transcription factor that is essential for photoreceptor development and maintenance. The G56R variant is exclusively responsible for all cases of -associated adRP.

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The ability to reprogram somatic cells into induced pluripotent stem cells (iPSCs) was developed in 2006 and represented a major breakthrough in stem cell research. A more recent milestone in biomedical research was reached in 2013 when the CRISPR/Cas9 system was used to edit the genome of mammalian cells. The coupling of both human (h)iPSCs and CRISPR/Cas9 technology offers great promise for cell therapy and regenerative medicine.

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Human-induced pluripotent stem cell (hiPSC)-derived retinal pigment epithelium (RPE) is a powerful tool for pathophysiological studies and preclinical therapeutic screening, as well as a source for clinical cell transplantation. Thus, it must be validated for maturity and functionality to ensure correct data readouts and clinical safety. Previous studies have validated hiPSC-derived RPE as morphologically characteristic of the tissue in the human eye.

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Environmental light has deleterious effects on the outer retina in human retinopathies, such as ABCA4-related Stargardt's disease and dry age-related macular degeneration. These effects involve carbonyl and oxidative stress, which contribute to retinal cell death and vision loss. Here, we used an albino Abca4 mouse model, the outer retina of which shows susceptibility to acute photodamage, to test the protective efficacy of a new polyunsaturated fatty acid lipophenol derivative.

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Article Synopsis
  • Usutu virus (USUV) is an African mosquito-borne flavivirus linked to West Nile virus, first discovered in South Africa in 1959, and has been spreading in Europe, notably causing high mortality in blackbirds.
  • Although primarily asymptomatic or mildly symptomatic, USUV has been associated with serious neurological issues in humans, raising health concerns.
  • This study found that USUV replicates effectively in the central nervous system and can cause inflammation and ocular defects in mice, suggesting the need for further research into its potential health impacts.
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Inherited retinal dystrophies (IRDs) are characterized by progressive photoreceptor degeneration and vision loss. Usher syndrome (USH) is a syndromic IRD characterized by retinitis pigmentosa (RP) and hearing loss. USH is clinically and genetically heterogeneous, and the most prevalent causative gene is .

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Induced pluripotent stem cells (iPSCs) have revolutionized the study of human diseases as they can renew indefinitely, undergo multi-lineage differentiation, and generate disease-specific models. However, the difficulty of working with iPSCs is that they are prone to genetic instability. Furthermore, genetically unstable iPSCs are often discarded, as they can have unforeseen consequences on pathophysiological or therapeutic read-outs.

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The human induced pluripotent stem cell (iPSC) line, INMi004-A, was generated using dermal fibroblasts from a 6 year-old patient with autosomal dominant Leber Congenital Amaurosis (LCA) caused by the point mutation c.695delC (p.Pro232Argfs*139) in the CRX gene.

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We generated an induced pluripotent stem cell (iPSC) line using dermal fibroblasts from a 53 year-old patient with autosomal dominant cone-rod dystrophy (CRD) caused by a missense mutation, c.121C > T, in the CRX gene. Patient fibroblasts were reprogrammed using the non-integrative Sendai virus reprogramming system and the human OSKM transcription factor cocktail.

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