Bimodal Visualization of Industrial X-Ray and Neutron Computed Tomography Data.

Advanced manufacturing creates increasingly complex objects with material compositions that are often difficult to characterize by a single modality. Our collaborating domain scientists are going beyond traditional methods by employing both X-ray and neutron computed tomography to obtain complementary representations expected to better resolve material boundaries. However, the use of two modalities creates its own challenges for visualization, requiring either complex adjustments of bimodal transfer functions or the need for multiple views.

Attribute-Aware RBFs: Interactive Visualization of Time Series Particle Volumes Using RT Core Range Queries.

Smoothed-particle hydrodynamics (SPH) is a mesh-free method used to simulate volumetric media in fluids, astrophysics, and solid mechanics. Visualizing these simulations is problematic because these datasets often contain millions, if not billions of particles carrying physical attributes and moving over time. Radial basis functions (RBFs) are used to model particles, and overlapping particles are interpolated to reconstruct a high-quality volumetric field; however, this interpolation process is expensive and makes interactive visualization difficult.

Exploring Classification of Topological Priors With Machine Learning for Feature Extraction.

In many scientific endeavors, increasingly abstract representations of data allow for new interpretive methodologies and conceptualization of phenomena. For example, moving from raw imaged pixels to segmented and reconstructed objects allows researchers new insights and means to direct their studies toward relevant areas. Thus, the development of new and improved methods for segmentation remains an active area of research.

Progressive Tree-Based Compression of Large-Scale Particle Data.

Scientific simulations and observations using particles have been creating large datasets that require effective and efficient data reduction to store, transfer, and analyze. However, current approaches either compress only small data well while being inefficient for large data, or handle large data but with insufficient compression. Toward effective and scalable compression/decompression of particle positions, we introduce new kinds of particle hierarchies and corresponding traversal orders that quickly reduce reconstruction error while being fast and low in memory footprint.

A Visual Comparison of Silent Error Propagation.

High-performance computing (HPC) systems play a critical role in facilitating scientific discoveries. Their scale and complexity (e.g.

Quick Clusters: A GPU-Parallel Partitioning for Efficient Path Tracing of Unstructured Volumetric Grids.

We propose a simple yet effective method for clustering finite elements to improve preprocessing times and rendering performance of unstructured volumetric grids without requiring auxiliary connectivity data. Rather than building bounding volume hierarchies (BVHs) over individual elements, we sort elements along with a Hilbert curve and aggregate neighboring elements together, improving BVH memory consumption by over an order of magnitude. Then to further reduce memory consumption, we cluster the mesh on the fly into sub-meshes with smaller indices using a series of efficient parallel mesh re-indexing operations.

AMM: Adaptive Multilinear Meshes.

Adaptive representations are increasingly indispensable for reducing the in-memory and on-disk footprints of large-scale data. Usual solutions are designed broadly along two themes: reducing data precision, e.g.

Towards replacing physical testing of granular materials with a Topology-based Model.

In the study of packed granular materials, the performance of a sample (e.g., the detonation of a high-energy explosive) often correlates to measurements of a fluid flowing through it.

Accelerating Unstructured Mesh Point Location With RT Cores.

We present a technique that leverages ray tracing hardware available in recent Nvidia RTX GPUs to solve a problem other than classical ray tracing. Specifically, we demonstrate how to use these units to accelerate the point location of general unstructured elements consisting of both planar and bilinear faces. This unstructured mesh point location problem has previously been challenging to accelerate on GPU architectures; yet, the performance of these queries is crucial to many unstructured volume rendering and compute applications.

Improving the Usability of Virtual Reality Neuron Tracing with Topological Elements.

Researchers in the field of connectomics are working to reconstruct a map of neural connections in the brain in order to understand at a fundamental level how the brain processes information. Constructing this wiring diagram is done by tracing neurons through high-resolution image stacks acquired with fluorescence microscopy imaging techniques. While a large number of automatic tracing algorithms have been proposed, these frequently rely on local features in the data and fail on noisy data or ambiguous cases, requiring time-consuming manual correction.

Ray Tracing Structured AMR Data Using ExaBricks.

Structured Adaptive Mesh Refinement (Structured AMR) enables simulations to adapt the domain resolution to save computation and storage, and has become one of the dominant data representations used by scientific simulations; however, efficiently rendering such data remains a challenge. We present an efficient approach for volume- and iso-surface ray tracing of Structured AMR data on GPU-equipped workstations, using a combination of two different data structures. Together, these data structures allow a ray tracing based renderer to quickly determine which segments along the ray need to be integrated and at what frequency, while also providing quick access to all data values required for a smooth sample reconstruction kernel.

Efficient and Flexible Hierarchical Data Layouts for a Unified Encoding of Scalar Field Precision and Resolution.

To address the problem of ever-growing scientific data sizes making data movement a major hindrance to analysis, we introduce a novel encoding for scalar fields: a unified tree of resolution and precision, specifically constructed so that valid cuts correspond to sensible approximations of the original field in the precision-resolution space. Furthermore, we introduce a highly flexible encoding of such trees that forms a parameterized family of data hierarchies. We discuss how different parameter choices lead to different trade-offs in practice, and show how specific choices result in known data representation schemes such as zfp [52], idx [58], and jpeg2000 [76].

Uncertainty Visualization of 2D Morse Complex Ensembles Using Statistical Summary Maps.

Morse complexes are gradient-based topological descriptors with close connections to Morse theory. They are widely applicable in scientific visualization as they serve as important abstractions for gaining insights into the topology of scalar fields. Data uncertainty inherent to scalar fields due to randomness in their acquisition and processing, however, limits our understanding of Morse complexes as structural abstractions.

SpotSDC: Revealing the Silent Data Corruption Propagation in High-Performance Computing Systems.

The trend of rapid technology scaling is expected to make the hardware of high-performance computing (HPC) systems more susceptible to computational errors due to random bit flips. Some bit flips may cause a program to crash or have a minimal effect on the output, but others may lead to silent data corruption (SDC), i.e.

Vector Field Decompositions Using Multiscale Poisson Kernel.

Extraction of multiscale features using scale-space is one of the fundamental approaches to analyze scalar fields. However, similar techniques for vector fields are much less common, even though it is well known that, for example, turbulent flows contain cascades of nested vortices at different scales. The challenge is that the ideas related to scale-space are based upon iteratively smoothing the data to extract features at progressively larger scale, making it difficult to extract overlapping features.

Improving Augmented Human Intelligence to Distinguish Burkitt Lymphoma From Diffuse Large B-Cell Lymphoma Cases.

Objectives: To assess and improve the assistive role of a deep, densely connected convolutional neural network (CNN) to hematopathologists in differentiating histologic images of Burkitt lymphoma (BL) from diffuse large B-cell lymphoma (DLBCL).

Methods: A total of 10,818 images from BL (n = 34) and DLBCL (n = 36) cases were used to either train or apply different CNNs. Networks differed by number of training images and pixels of images, absence of color, pixel and staining augmentation, and depth of the network, among other parameters.

Ray Tracing Generalized Tube Primitives: Method and Applications.

We present a general high-performance technique for ray tracing generalized tube primitives. Our technique efficiently supports tube primitives with fixed and varying radii, general acyclic graph structures with bifurcations, and correct transparency with interior surface removal. Such tube primitives are widely used in scientific visualization to represent diffusion tensor imaging tractographies, neuron morphologies, and scalar or vector fields of 3D flow.

Scalable Topological Data Analysis and Visualization for Evaluating Data-Driven Models in Scientific Applications.

With the rapid adoption of machine learning techniques for large-scale applications in science and engineering comes the convergence of two grand challenges in visualization. First, the utilization of black box models (e.g.

High-throughput feature extraction for measuring attributes of deforming open-cell foams.

Metallic open-cell foams are promising structural materials with applications in multifunctional systems such as biomedical implants, energy absorbers in impact, noise mitigation, and batteries. There is a high demand for means to understand and correlate the design space of material performance metrics to the material structure in terms of attributes such as density, ligament and node properties, void sizes, and alignments. Currently, X-ray Computed Tomography (CT) scans of these materials are segmented either manually or with skeletonization approaches that may not accurately model the variety of shapes present in nodes and ligaments, especially irregularities that arise from manufacturing, image artifacts, or deterioration due to compression.

Toward Localized Topological Data Structures: Querying the Forest for the Tree.

Topological approaches to data analysis can answer complex questions about the number, connectivity, and scale of intrinsic features in scalar data. However, the global nature of many topological structures makes their computation challenging at scale, and thus often limits the size of data that can be processed. One key quality to achieving scalability and performance on modern architectures is data locality, i.

NLIZE: A Perturbation-Driven Visual Interrogation Tool for Analyzing and Interpreting Natural Language Inference Models.

With the recent advances in deep learning, neural network models have obtained state-of-the-art performances for many linguistic tasks in natural language processing. However, this rapid progress also brings enormous challenges. The opaque nature of a neural network model leads to hard-to-debug-systems and difficult-to-interpret mechanisms.

ISAVS: Interactive Scalable Analysis and Visualization System.

Modern science is inundated with ever increasing data sizes as computational capabilities and image acquisition techniques continue to improve. For example, simulations are tackling ever larger domains with higher fidelity, and high-throughput microscopy techniques generate larger data that are fundamental to gather biologically and medically relevant insights. As the image sizes exceed memory, and even sometimes local disk space, each step in a scientific workflow is impacted.

A Study of the Trade-off Between Reducing Precision and Reducing Resolution for Data Analysis and Visualization.

There currently exist two dominant strategies to reduce data sizes in analysis and visualization: reducing the precision of the data, e.g., through quantization, or reducing its resolution, e.

Shared-Memory Parallel Computation of Morse-Smale Complexes with Improved Accuracy.

Topological techniques have proven to be a powerful tool in the analysis and visualization of large-scale scientific data. In particular, the Morse-Smale complex and its various components provide a rich framework for robust feature definition and computation. Consequently, there now exist a number of approaches to compute Morse-Smale complexes for large-scale data in parallel.

Interactive Visualization and Exploration of Patient Progression in a Hospital Setting.

As medical organizations increasingly adopt the use of electronic health records (EHRs), large volumes of clinical data are being captured on a daily basis. These data provide comprehensive information about patients and have the potential to improve a wide range of application domains in healthcare. Physicians and clinical researchers are interested in finding effective ways to understand this abundance of data.