Publications by authors named "Valentin Klein"
We present here FrangiPANe, a pipeline developed to build panreference using short reads through a map-then-assemble strategy. Applying it to 248 African rice genomes using an improved CG14 reference genome, we identified an average of 8 Mb of new sequences and 5290 new contigs per individual. In total, 1.
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- Third-generation sequencing allows for longer DNA reads, enhancing studies in biodiversity and genetics.
- We developed a cost-effective hybrid capture protocol to enrich and capture long plastid genome fragments from six different plant species.
- The method yielded high enrichment rates for plastome fragments, though DNA from dried leaves produced lower quality results compared to fresh leaves.