Publications by authors named "V R Trifonov"

The Darkveti-Meshoko culture (c.5000-3500/3300 BCE) is the earliest known farming community in the Northern Caucasus, but its contribution to the genetic profile of the neighboring steppe herders has remained unclear. We present analysis of human DNA from the Nalchik cemetery-the oldest Eneolithic site in the Northern Caucasus-which shows a link with the LowerVolga's first herders of the Khvalynsk culture.

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The Yamnaya archaeological complex appeared around 3300BCE across the steppes north of the Black and Caspian Seas, and by 3000BCE reached its maximal extent from Hungary in the west to Kazakhstan in the east. To localize the ancestral and geographical origins of the Yamnaya among the diverse Eneolithic people that preceded them, we studied ancient DNA data from 428 individuals of which 299 are reported for the first time, demonstrating three previously unknown Eneolithic genetic clines. First, a "Caucasus-Lower Volga" (CLV) Cline suffused with Caucasus hunter-gatherer (CHG) ancestry extended between a Caucasus Neolithic southern end in Neolithic Armenia, and a steppe northern end in Berezhnovka in the Lower Volga.

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Article Synopsis
  • B chromosomes, defined as nonessential genetic elements, have various characteristics such as size, origins, and behaviors.
  • Recent studies have prompted a reevaluation of earlier definitions and categorizations of B chromosomes.
  • The insights gained may aid future research and classification of newly discovered chromosomal elements in genomic studies.
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Article Synopsis
  • Predicting compound activity in drug discovery has been a challenge, but using computational models with gene expression signatures can help bridge this gap.
  • The transcriptomics-to-activity transformer (TAT) models utilize gene expression data from compounds at various concentrations to predict their activity across different assays.
  • Our study showed that TAT models successfully predicted activities for 51% of tested assays and validated a 63% hit rate in identifying malaria inhibitors, highlighting their potential for efficiently discovering bioactive compounds.
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Descriptions of karyotypes of many animal species are currently available. In addition, there has been a significant increase in the number of sequenced genomes and an ever-improving quality of genome assembly. To close the gap between genomic and cytogenetic data we applied fluorescent in situ hybridization (FISH) and Hi-C technology to make the first full chromosome-level genome comparison of the guinea pig (Cavia porcellus), naked mole-rat (Heterocephalus glaber), and human.

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