Comparative Analysis of Differential Cellular Transcriptome and Proteome Regulation by HIV-1 and HIV-2 Pseudovirions in the Early Phase of Infection.

In spite of the similar structural and genomic organization of human immunodeficiency viruses type 1 and 2 (HIV-1 and HIV-2), striking differences exist between them in terms of replication dynamics and clinical manifestation of infection. Although the pathomechanism of HIV-1 infection is well characterized, relatively few data are available regarding HIV-2 viral replication and its interaction with host-cell proteins during the early phase of infection. We utilized proteo-transcriptomic analyses to determine differential genome expression and proteomic changes induced by transduction with HIV-1/2 pseudovirions during 8, 12 and 26 h time-points in HEK-293T cells.

Establishing the Range of Applicability of Hydrodynamics in High-Energy Collisions.

We simulate the space-time dynamics of high-energy collisions based on a microscopic kinetic description in the conformal relaxation time approximation, in order to determine the range of applicability of an effective description in relativistic viscous hydrodynamics. We find that hydrodynamics provides a quantitatively accurate description of collective flow when the average inverse Reynolds number Re^{-1} is sufficiently small and the early preequilibrium stage is properly accounted for. We further discuss the implications of our findings for the (in)applicability of hydrodynamics in proton-proton, proton-nucleus, and light nucleus collisions.

Alternatively spliced exon regulates context-dependent MEF2D higher-order assembly during myogenesis.

During muscle cell differentiation, the alternatively spliced, acidic β-domain potentiates transcription of Myocyte-specific Enhancer Factor 2 (Mef2D). Sequence analysis by the FuzDrop method indicates that the β-domain can serve as an interaction element for Mef2D higher-order assembly. In accord, we observed Mef2D mobile nuclear condensates in C2C12 cells, similar to those formed through liquid-liquid phase separation.

Early suppression of antiviral host response and protocadherins by SARS-CoV-2 Spike protein in THP-1-derived macrophage-like cells.

The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is the causative agent of coronavirus disease-19 (COVID-19). The spike protein (S) of SARS-CoV-2 plays a crucial role in mediating viral infectivity; hence, in an extensive effort to curb the pandemic, many urgently approved vaccines rely on the expression of the S protein, aiming to induce a humoral and cellular response to protect against the infection. Given the very limited information about the effects of intracellular expression of the S protein in host cells, we aimed to characterize the early cellular transcriptomic changes induced by expression of the S protein in THP-1-derived macrophage-like cells.

Fast kinetic simulator for relativistic matter.

Relativistic kinetic theory is ubiquitous to several fields of modern physics, finding application at large scales in systems in astrophysical contexts, all of the way down to subnuclear scales and into the realm of quark-gluon plasmas. This motivates the quest for powerful and efficient computational methods that are able to accurately study fluid dynamics in the relativistic regime as well as the transition to beyond hydrodynamics-in principle all of the way down to ballistic regimes. We present a family of relativistic lattice kinetic schemes for the efficient simulation of relativistic flows in both strongly (fluid) and weakly (rarefied gas) interacting regimes.