Publications by authors named "V A Karavaeva"

Corrinoids are cobalt-containing tetrapyrroles. They include adenosylcobalamin (vitamin B) and cobamides that function as cofactors and coenzymes for methyl transfer, radical-dependent and redox reactions. Though cobamides are the most complex cofactors in nature, they are essential in the acetyl-CoA pathway, thought to be the most ancient CO-fixation pathway, where they perform a pterin-to-cobalt-to-nickel methyl transfer reaction catalyzed by the corrinoid iron-sulphur protein (CoFeS).

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Article Synopsis
  • - Archaea is one of the least studied domains of life, but new metagenomic techniques have led to the discovery of many new lineages, revealing that a large portion (42%) of archaeal genomes remain uncharacterized despite the use of automatic genomic annotations.
  • - The study analyzed 2,978 archaeal genomes and compared the effectiveness of different bioinformatics tools in classifying these genomes, finding that many functional models fail to account for the diversity of recent archaeal discoveries.
  • - The findings suggest a significant gap in automatically classifying archaeal metabolism and highlight the need for more detailed research and refined annotation methods to fully understand the functional potential of archaeal genomes.
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Intracellular heme formation and trafficking are fundamental processes in living organisms. Bacteria and archaea utilize three biogenesis pathways to produce iron protoporphyrin IX (heme ) that diverge after the formation of the common intermediate uroporphyrinogen III (uro'gen III). In this study, we identify and provide a detailed characterization of the enzymes involved in the transformation of uro'gen III into heme in , demonstrating that this bacterium utilizes the protoporphyrin-dependent (PPD) pathway.

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Succinate dehydrogenases (SDHs) and fumarate reductases (FRDs) catalyse the interconversion of succinate and fumarate, a reaction highly conserved in all domains of life. The current classification of SDH/FRDs is based on the structure of the membrane anchor subunits and their cofactors. It is, however, unknown whether this classification would hold in the context of evolution.

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An increased ethidium bromide fluorescence at 610 nm was observed in the presence of cholinesterases from some natural sources, and a new fluorescence band appeared in the 500-570 nm region. The data obtained suggest a resonance energy transfer from the cholinesterase-ethidium bromide complex to a free ethidium bromide molecule. The structure of the peripheral ligand binding sites in the active center of bovine erythrocyte acetylcholinesterase, horse serum butyrylcholinesterase, and squid ganglia cholinesterase proved essentially similar.

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