Publications by authors named "Unver T"

Chondroitin Sulfate (CS) is an essential component of the extracellular matrix and is a sulfated glycosaminoglycan structurally composed of a polysaccharide chain consisting of N-acetyl galactosamine and glucuronic acid. The use of CS of animal origin is common in pharmacological research. The disadvantages of traditional sources and methods used in the production of CS, which is used in various applications in the medicine, veterinary, pharmacy, and cosmetic sectors, have made microbial production a vital alternative.

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The tendency toward natural herbal products has increased due to the antibiotic resistance developed by microorganisms and the severe side effects of antibiotics commonly used in infectious diseases worldwide. Although antimicrobial studies have been conducted with several species of the genus, this study is the first in the literature to be performed with L. subsp.

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is a pharmacotherapeutic herbaceous plant belonging to the Asteraceae family and consumed as a vegetable. Here, the methanolic and water extracts of were obtained from its aboveground parts (stem, leaves, and flowers), and the phytochemical potentials were investigated by LC-HRMS (liquid chromatography-high resolution mass spectrometry) analysis for the first time. The antibacterial, antifungal, and anticarcinogenic activities of extracts were investigated using experimental and in silico methods.

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Antibiotic resistance in infectious diseases has been a serious problem for the last century, and scientists have focused on discovering new natural antimicrobial agents. Pinus pinea has been used as a natural pharmacotherapeutic agent with antimutagenic, anticarcinogenic, and high antioxidant properties. In this study, GC-MS and LC-HR/MS were employed to analyze Pinus pinea L.

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Article Synopsis
  • A high-quality genome of rosemary (Salvia rosmarinus) was generated, revealing 46,121 protein-coding genes and a significant genome duplication around 28.3 million years ago, enhancing understanding of its evolution and environmental adaptation.
  • Comparative analysis showed rosemary's close genetic relationship with Salvia splendens and Salvia miltiorrhiza, with 1,918 gene families expanded, 35 involved in producing antioxidant components important for environmental resilience.
  • Multi-omics analysis indicated that certain antioxidant biosynthesis genes were up-regulated during abiotic stress, demonstrating how rosemary adapts to harsh conditions by stabilizing ROS levels and supporting cell functionality through integrated metabolic processes.
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This study investigates the performance of reverse transcription loop-mediated isothermal amplification (RT-LAMP) assay for the colorimetric detection of SARS-CoV-2 using fluorometric dye, namely, calcein. The detection limit (LoD) with the N-ID1 primer set resulted in superior performance, corresponding to ~ 2 copies/reaction or ~ 0.1 copies/μL of the RNA sample.

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Extraction of permanent first molars (P1Ms) could create gaps, tipping and/or rotating of neighboring teeth, which depend on the extraction timing. This study evaluated the outcomes of P1Ms extraction in children who were classified based on their permanent second molar's (P2Ms) dental calcification at the time of extraction. In this retrospective study, the evaluations were made for 406 panoramic radiographs (PRs) of children aged 7-14 years who had single P1M extracted.

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Cancer has the second-highest mortality rate worldwide after cardiovascular disease. In addition, breast and cervical cancer are two of the leading causes of cancer-related deaths among women. The tumor microenvironment, which consists of fibroblasts, immune cells, cells that form blood vessels, and proteins, is a therapeutic target for cancer therapy.

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Chondroitin synthesis was performed using the recombinant Escherichia coli(C2987) strain created by transforming the plasmid pETM6-PACF-vgb, which carries the genes responsible for chondroitin synthesis, kfoA, kfoC, kfoF, and the Vitreoscilla hemoglobin gene (vgb). Then, Microbial chondroitin sulfate (MCS)'s antioxidant, anticholinesterase, and antibacterial activity were compared with commercial chondroitin sulfate (CCS). The antioxidant studies revealed that the MCS and CCS samples could be potential targets for scavenging radicals and cupric ion reduction.

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Objective: This study examines the test-retest reliability, the minimal clinically important difference (MCID), and its correlation with the Rolland Morris Disability Questionnaire (RMDQ) of the Dubousset Functional Test (DFT) in evaluating the functional capacity and dynamic balance of patients with chronic non-specific low back pain (cnsLBP).

Methods: Seventy-five patients with cnsLBP aged 18 years and over were included. The Five-Repetition Sit-To-Stand Test (5R-STS), the subcomponents of the DFT (the Up and Walk Test, the Steps Test, the Down and Sitting Test, and the Dual-Tasking Test) were administered to the patients.

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Allotetraploid cotton () species represents a model system for the study of plant polyploidy, molecular evolution, and domestication. Here, chromosome-scale genome sequences were obtained and assembled for two recently described wild species of tetraploid cotton, [(AD), ] and [(AD), ], and one early form of domesticated , race [(AD), ]. Based on phylogenomic analysis, we provide a dated whole-genome level perspective for the evolution of the tetraploid clade and resolved the evolutionary relationships of , , and domesticated .

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Article Synopsis
  • COVID-19, caused by the SARS-CoV-2 virus, has led to global infections and deaths, highlighting the urgent need for better and faster testing methods.
  • The study evaluates a new rapid testing method called RT-LAMP, which can detect the virus by targeting specific genes and has shown high sensitivity (94.6%) and specificity (92.9%) compared to the standard RT-PCR test.
  • Results can be obtained in about 20 minutes, with a simple color change in the colorimetric assay making it a practical option for on-site testing in various settings.
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Objective: This study aims to compare the changes in the nasal airway volume and nasal airflow using acoustic rhinometry (AR), rhinomanometry (RMN), and dental volumetric tomography (DVT) after surgically assisted rapid maxillary expansion (SARME).

Study Design: Our study consists of 13 adults, 3 male and 10 female patients, aged between 15 and 26, with completed skeletal development. In our study, DVT imaging was obtained twice, preoperation and 3 months after expansion.

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Article Synopsis
  • * A collaborative effort resulted in a fully annotated reference wheat genome published in 2018, followed by the release of genomes from 15 global wheat accessions in 2020, marking the start of the pan-genomic era for wheat.
  • * These developments allow for more efficient genetic analysis using advanced genotyping methods, enhancing marker-assisted selection and genomic selection, which in turn improves key traits like grain yield and stress resistance in wheat breeding.
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Congenital diaphragmatic hernia (CDH) is an anomaly characterized by a defect in the diaphragm, leading to the passage of intra-abdominal organs into the thoracic cavity. Herein, the presented work analyzes the global gene expression profiles in nine CDH and one healthy newborn. All of the patients had left posterolateral (Bochdalek) diaphragmatic hernia, operated via an abdominal approach, and stomach and bowels in the thorax cavity.

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Article Synopsis
  • The study sequenced the genomes of two cultivated olive tree varieties (Ayvalik and Picual) for the first time and compared them with two others (Farga and Leccino) to explore oil biosynthesis.
  • All four cultivars were organized into 23 pseudochromosomes, yielding varying genome sizes and a substantial number of predicted gene models assigned to their respective chromosomes.
  • The analysis identified many oil biosynthesis-related sequences across the cultivars, revealing both shared and unique genetic elements that highlight the complexity of oil biosynthesis regulation in olives through multiple biological pathways.
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Objective: Our study compared the effects of injectable platelet-rich fibrin (i-PRF) with those of corticosteroids in the treatment of erosive oral lichen planus (EOLP).

Methodology: This split-mouth study included 24 individuals diagnosed histopathologically with bilateral EOLP. One bilateral lesion was injected with i-PRF, whereas the other was injected with methylprednisolone acetate in four sessions at 15-day intervals.

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  • Aegilops tauschii is crucial as the donor of the D subgenome for hexaploid wheat and has a new reference-quality genome sequence (Aet v5.0) that enhances its use in wheat research and breeding.
  • Improvements to the genome included closing 38,899 gaps using advanced sequencing techniques, which resulted in the updating and reannotation of protein-coding genes and transposable elements.
  • The new assembly features the annotation of important genes related to plant features and disease resistance, revealing specific patterns of gene distribution on chromosomes that can inform future breeding programs.
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Secondary metabolites are particularly important to humans due to their pharmaceutical properties. Moreover, secondary metabolites are key compounds in climate change adaptation in long-living trees. Recently, it has been described that the domestication of subspecies had no major selection signature on coding variants and was mainly related to changes in gene expression.

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Objective: To evaluate the impact of vaginal microbiota on pregnancy outcomes in women undergoing assisted reproduction.

Design: A prospective cohort study.

Setting: A university-based assisted reproductive technology (ART) centre.

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Clavibacter michiganensis subsp. michiganensis (Cmm) is a gram-positive bacterium causing destructive bacterial wilt and canker disease in tomato. Herein, a comparative transcriptome analysis was performed on Cmm-resistant and -susceptible tomato lines.

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