Publications by authors named "Ulyana Dzhus"

The main function of dUTPases is to regulate the cellular levels of dUTP and dTTP, thereby playing a crucial role in DNA repair mechanisms. Despite the fact that mutant organisms with obliterated dUTPase enzymatic activity remain viable, it is not possible to completely knock out the gene due to the lethal consequences of such a mutation for the organism. As a result, it is considered that this class of enzymes performs an additional function that is essential for the organism's survival.

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Bacterial S1 protein is a functionally important ribosomal protein. It is a part of the 30S ribosomal subunit and is also able to interact with mRNA and tmRNA. An important feature of the S1 protein family is a strong tendency towards aggregation.

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Controlling the aggregation of vital bacterial proteins could be one of the new research directions and form the basis for the search and development of antibacterial drugs with targeted action. Such approach may be considered as an alternative one to antibiotics. Amyloidogenic regions can, like antibacterial peptides, interact with the "parent" protein, for example, ribosomal S1 protein (specific only for bacteria), and interfere with its functioning.

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It has been demonstrated using Aβ40 and Aβ42 recombinant and synthetic peptides that their fibrils are formed of complete oligomer ring structures. Such ring structures have a diameter of about 8-9 nm, an oligomer height of about 2- 4 nm, and an internal diameter of the ring of about 3-4 nm. Oligomers associate in a fibril in such a way that they interact with each other, overlapping slightly.

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The data presented in this article are related to the research article entitled "One of the possible mechanisms of amyloid fibrils formation based on the sizes of primary and secondary folding nuclei of Aβ40 and Aβ42" (Dovidchenko et al., 2016) [1]. Aβ peptide is one of the most intensively studied amyloidogenic peptides.

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Article Synopsis
  • The paper investigates the formation of Aβ amyloid fibrils using theoretical models and experimental techniques like electron microscopy and X-ray diffraction.
  • It determines the sizes of the "nuclei" required to form these fibrils, finding that Aβ42 has a primary nucleus of 3 monomers and a secondary nucleus of 2, while Aβ40 has a primary nucleus of 2 monomers and a secondary nucleus of 1.
  • The study proposes a new model for amyloid fibril organization, suggesting that therapy targets should focus on specific oligomer sizes (tetramers for Aβ42 and trimers for Aβ40) to effectively inhibit their formation.
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