Publications by authors named "Tyedmers J"

Article Synopsis
  • HDAC3 and NCoR1/2 are crucial epigenetic regulators that influence gene expression and metabolism by acting as transcriptional co-repressors.
  • Genetic deletion of HDAC3 and NCoR1 in mice has shown improved glucose tolerance and insulin sensitivity, indicating their significant roles in managing metabolic processes.
  • Disruption of the HDAC3/NCoR1/2 complex is linked to cardio-metabolic diseases like obesity and type 2 diabetes, highlighting the potential for targeting this pathway in future therapies.
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Catecholamines stimulate the first step of lipolysis by PKA-dependent release of the lipid droplet-associated protein ABHD5 from perilipin to co-activate the lipase ATGL. Here, we unmask a yet unrecognized proteolytic and cardioprotective function of ABHD5. ABHD5 acts and as a serine protease cleaving HDAC4.

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Article Synopsis
  • Protein aggregates are linked to various neurodegenerative diseases and form when the Protein Quality Control System cannot manage misfolded proteins due to stress, aging, or excess misfolded proteins.
  • Yeast serves as an effective model for studying how cells recognize, recruit, and organize misfolded proteins into different deposition sites, including the Insoluble PrOtein Deposit (IPOD) that specifically handles amyloid aggregates.
  • Understanding the composition and mechanisms involved in amyloid aggregate management at the IPOD can provide insights into cellular responses to toxicity and may have implications for neurodegenerative disease research.
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Levels of reactive metabolites such as reactive carbonyl and oxygen species are increased in patients with diabetes mellitus. The most important reactive dicarbonyl species, methylglyoxal (MG), formed as by-product during glucose metabolism, is more and more recognized as a trigger for the development and progression of diabetic complications. Although it is clear that MG provokes toxic effects, it is currently not well understood what cellular changes MG induces on a molecular level that may lead to pathophysiological conditions found in long-term diabetic complications.

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Energy production is inevitably linked to the generation of toxic metabolites, such as reactive oxygen and carbonyl species, known as major contributors to ageing and degenerative diseases. It remains unclear how cells can adapt to elevated energy flux accompanied by accumulating harmful by-products without taking any damage. Therefore, effects of a sudden rise in glucose concentrations were studied in yeast cells.

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Sequestration of aggregates into specialized deposition sites occurs in many species across all kingdoms of life ranging from bacteria to mammals and is commonly believed to have a cytoprotective function. Yeast cells possess at least 3 different spatially separated deposition sites, one of which is termed "Insoluble Protein Deposit (IPOD)" and harbors amyloid aggregates. We have recently discovered that recruitment of amyloid aggregates to the IPOD uses an actin cable based recruitment machinery that also involves vesicular transport.

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Aggregation of amyloidogenic proteins is associated with several neurodegenerative diseases. Sequestration of misfolded and aggregated proteins into specialized deposition sites may reduce their potentially detrimental properties. Yeast exhibits a distinct deposition site for amyloid aggregates termed "Insoluble PrOtein Deposit (IPOD)", but nothing is known about the mechanism of substrate recruitment to this site.

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Protein aggregation is both a hallmark of and a driving force for a number of diseases. It is therefore important to identify the nature of these aggregates and the mechanism(s) by which the cell counteracts their detrimental properties. Currently, the study of aggregation in vivo is performed primarily using fluorescently tagged versions of proteins and analyzing the aggregates by fluorescence microscopy.

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Cells adapt to changing nutrient availability by modulating a variety of processes, including the spatial sequestration of enzymes, the physiological significance of which remains controversial. These enzyme deposits are claimed to represent aggregates of misfolded proteins, protein storage, or complexes with superior enzymatic activity. We monitored spatial distribution of lipid biosynthetic enzymes upon glucose depletion in Saccharomyces cerevisiae.

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Article Synopsis
  • The study investigated how human insulin and its analogues can protect against lifespan reduction and neuronal damage in the nematode Caenorhabditis elegans under high glucose conditions, similar to those found in diabetes.
  • Results showed that insulin treatments countered the adverse effects of high glucose, reducing reactive oxygen species (ROS) and advanced glycation end-products (AGEs), while enhancing the activity of protective enzymes like superoxide dismutase (SOD).
  • The beneficial effects of insulin were linked to a specific signaling pathway involving the daf-2 insulin receptor and the daf-16/FOXO transcription factor, which helps regulate detoxifying processes in the cells.
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Incorporating fluorescent amino acids by suppression of the TAG amber codon is a useful tool for site-specific labeling of proteins and visualizing their localization in living cells. Here we use a plasmid encoded orthogonal tRNA/aminoacyl-tRNA synthetase pair to site-specifically label firefly luciferase with the environmentally sensitive fluorescent amino acid, 3-(6-acetylnaphthalen-2-ylamino)-2- aminopropanoic acid (ANAP) and explore the detectability of conformational changes in labeled luciferase in the yeast cytoplasm. We find that ANAP labeling efficiency is greatly increased in [PSI+] cells and show that analysis of the ANAP fluorescence emission by confocal imaging allows for tracking the thermal unfolding and aggregation of luciferase in vivo.

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Article Synopsis
  • Heat stress in cells leads to protein misfolding, aggregation, and the formation of stress granules (heat-SGs) that store mRNA and translation machinery, limiting protein synthesis.
  • Research shows that heat-SGs in yeast and fruit flies contain mRNA, translation components, and chaperones, and they associate with misfolded protein aggregates, showing different movement behaviors.
  • The recovery of translation after heat stress is linked to the disassembly of heat-SGs and requires the chaperones Hsp104 and Hsp70, indicating that protein disaggregation and translation timing are coordinated for proper protein quality control.
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Methylglyoxal (MG), the major dicarbonyl substrate of the enzyme glyoxalase 1 (GLO1), is a reactive metabolite formed via glycolytic flux. Decreased GLO1 activity in situ has been shown to result in an accumulation of MG and increased formation of advanced glycation endproducts, both of which can accumulate during physiological aging and at an accelerated rate in diabetes and other chronic degenerative diseases. To determine the physiological consequences which result from elevated MG levels and the role of MG and GLO1 in aging, wound healing in young (≤12 weeks) and old (≥52 weeks) wild-type mice was studied.

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  • Yeast prions enable "protein-only" inheritance, creating diverse traits in wild yeast through conformational changes in the Sup35 protein.
  • The heritability of these traits is ensured by the self-templating nature of amyloid conformations and the role of heat-shock proteins in distributing these templates to daughter cells.
  • Cryo-electron tomography revealed the 3D arrangement of [PSI(+)] prion assemblies as aligned bundles of fibrils, with additional structures that may help coordinate prion inheritance processes.
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Hsp100 and Hsp70 chaperones in bacteria, yeast, and plants cooperate to reactivate aggregated proteins. Disaggregation relies on Hsp70 function and on ATP-dependent threading of aggregated polypeptides through the pore of the Hsp100 AAA(+) hexamer. In yeast, both chaperones also promote propagation of prions by fibril fragmentation, but their functional interplay is controversial.

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Article Synopsis
  • The chaperones ClpB (E. coli) and Hsp104 (yeast), along with Hsp70/Hsp40, work together to reactivate aggregated proteins in their respective organisms.
  • Hsp104 and Hsp70/Hsp40 are essential for managing prion aggregates in yeast cells, enabling the maintenance and transmission of these aggregates.
  • Recent studies highlight both common mechanisms and unique sensitivities in how Hsp104 and Hsp70/Hsp40 collaborate to reshape amorphous aggregates and prion fibrils.
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The yeast prion phenomenon is very widespread and mounting evidence suggests that it has an impact on cellular regulatory mechanisms related to phenotypic responses to changing environments. Studying the aggregation patterns of prion amyloids during different stages of the prion life cycle is a first key step to understand major principles of how and where cells generate, organize and turn-over prion aggregates. The induction of the [PSI (+) ] state involves the actin cytoskeleton and quality control compartments such as the Insoluble Protein Deposit (IPOD).

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An inevitable consequence of metabolism in cells across all kingdoms of life is the non-enzymatic formation of toxic metabolites such as reactive oxygen species (ROS) and reducing sugars, whose reaction products are associated with several diseases such as clinical complications of diabetes, cataracts, cancer and age-related late-onset diseases like Parkinson's Disease and Alzheimer's Disease, amongst others. Yeast has been used successfully to study the reaction of these toxic metabolites with proteins in vivo, which I will summarize with exemplified studies on 2 crucial reactions, protein carbonylation and protein glycation.

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Prions are self-perpetuating aggregated proteins that are not limited to mammalian systems but also exist in lower eukaryotes including yeast. While much work has focused around chaperones involved in prion maintenance, including Hsp104, little is known about factors involved in the appearance of prions. De novo appearance of the [PSI+] prion, which is the aggregated form of the Sup35 protein, is dramatically enhanced by transient overexpression of SUP35 in the presence of the prion form of the Rnq1 protein, [PIN+].

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The aggregation of misfolded proteins is associated with the perturbation of cellular function, ageing and various human disorders. Mounting evidence suggests that protein aggregation is often part of the cellular response to an imbalanced protein homeostasis rather than an unspecific and uncontrolled dead-end pathway. It is a regulated process in cells from bacteria to humans, leading to the deposition of aggregates at specific sites.

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When the translation termination factor Sup35 adopts the prion state, [PSI(+)], the read-through of stop codons increases, uncovering hidden genetic variation and giving rise to new, often beneficial, phenotypes. Evidence suggests that prion induction involves a process of maturation, but this has never been studied in detail. To do so, we used a visually tractable prion model consisting of the Sup35 prion domain fused to GFP (PrD-GFP) and overexpressed it to achieve induction in many cells simultaneously.

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Article Synopsis
  • Evolution relies on how genetic variation leads to new traits, and there's ongoing debate about whether organisms have special mechanisms to enhance their evolutionary potential.
  • Capacitor systems can store hidden genetic variation and release it when the organism faces stress, potentially aiding adaptation.
  • In yeast, the prion [PSI(+)] reveals previously concealed genetic traits, and its induction significantly increases under stress, suggesting it plays a role in enhancing survival and evolutionary adaptation during challenging conditions.
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Previous studies have shown that the rough endoplasmic reticulum (ER) contains nascent precursor polypeptide gated channels. Circumstantial evidence suggests that these channels are formed by the Sec61p complex. We reconstituted the purified Sec61p complex in a lipid bilayer and characterized its dynamics and regulation.

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The first step in the secretion of most mammalian proteins is their transport into the lumen of the endoplasmic reticulum (ER). Transport of pre-secretory proteins into the mammalian ER requires signal peptides in the precursor proteins and a protein translocase in the ER membrane. In addition, hitherto unidentified lumenal ER proteins have been shown to be required for vectorial protein translocation.

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Article Synopsis
  • Tail-anchored proteins are unique membrane proteins with a C-terminal insertion sequence that integrate into membranes post-translation, primarily at the endoplasmic reticulum (ER).
  • Researchers used a cross-linking technique to discover ER components involved in the insertion of these proteins, identifying key ER proteins like Sec61 translocon subunits.
  • The study suggests that the mechanisms for integrating tail-anchored and signal-anchored proteins at the ER share significant similarities, indicating a potential overlap in their insertion pathways.
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