Publications by authors named "Trifan Budi"

Background/objectives: Accipitridae mitogenomes exhibit unique structural variations, including duplicated control regions (CRs) that undergo gradual degeneration into pseudo-CRs, revealing a complex evolutionary landscape. However, annotation of this characteristic in a subset of accipitrid genomes is lacking. Due to the taxonomic diversity of Accipitridae and the presence of understudied species, comprehensive mitogenomic studies are essential.

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Article Synopsis
  • Thai fighting cock breeds in Thailand, such as Lueng Hang Khao and Pradu Hang Dam, have cultural significance and unique characteristics for fighting and consumption, but their genetic diversity is not well understood.
  • The study aimed to analyze the genetic variation and differentiation among these breeds using genotyping to understand the effects of human selection on their genetic structure.
  • Results indicated that artificial selection and genetic drift led to subpopulations within fighting cocks, highlighting the impact of breeding practices on genetic diversity and the need for effective management strategies.
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Over hundreds of years, cats have been domesticated and selectively bred, resulting in numerous pedigreed breeds expedited by recent cat shows and breeding associations. Concerns have been raised about the limited breeding options and the genetic implications of inbreeding, indicating challenges in maintaining genetic diversity and accurate identification in purebred cats. In this study, genetic variability and structure were examined in 5 Thai domestic cat breeds using 15 microsatellite markers and mitochondrial DNA (mtDNA) D-loop sequencing.

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Objective: The remarkable adaptability to the environment, high growth rate, meat with good taste and aroma, and ornamental appearance of the Pradu Hang Dam (PDH) and Samae Dam (SD) chickens make them valuable for improvement of poultry production to enhance food security. However, despite their close phenotypic similarity, distinct classification of PDH and SD chickens remains controversial. Thus, this study aimed to clarify genetic origins and variation between PDH and SD chickens, genetic diversity and structures of PDH and SD chickens.

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High levels of purine and uric acid, which are associated with health issues such as gout and cardiovascular disease, are found in the meat of fast-growing broiler chickens, which raises concerns about the quality of chicken meat and the health of the consumers who consume it. High genetic homogeneity and uniformity, particularly in genes involved in the synthesis of inosine monophosphate (IMP) and subsequent process of purine synthesis, which are associated with the meat quality, are exhibited in commercial broiler chickens owing to intensive inbreeding programs. Adenosine succinate lyase (ADSL) is a key enzyme involved in de novo purine biosynthetic pathway and its genetic polymorphisms affect IMP metabolism and purine content.

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Background: The Bangkaew dog is an indigenous dog breed in the Phitsanulok province of Thailand. This breed is recognized by the Fédération Cynologique Internationale (FCI), a global canine organization. The unique traits of the Bangkaew breed lead to purebred selection for breeding, while only their traits and pedigree from parental history are recorded.

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The thermal stress caused by global climate change adversely affects the welfare, productivity, and reproductive performance of farm animals, including chickens, and causes substantial economic losses. However, the understanding of the genetic basis of the indigenous chicken adaptation to high ambient temperatures is limited. Hence, to reveal the genetic basis of thermal stress adaptation in chickens, this study investigated polymorphisms in the heat shock protein 70 (HSP70) and HSP90 genes, known mechanisms of cellular defense against thermal stress in indigenous and local chicken breeds and red junglefowls in Thailand.

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Article Synopsis
  • - Lao Pa Koi (LPK) chickens are a prized fighting breed in Thailand, known for their unique genetics derived from the combination of red junglefowls and domestic chickens, analyzed through microsatellite markers and mitochondrial DNA.
  • - The study found high genetic diversity in LPK chickens, identifying six mtDNA haplotypes and 182 microsatellite alleles, confirming their mixed genetic heritage.
  • - A spatial analysis revealed that the majority of the studied area is unsuitable for LPK chickens, with optimal elevation for their distribution being between 100-250 meters, highlighting important factors for their habitat and future breeding improvements.
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Article Synopsis
  • * The study utilized 28 microsatellite markers and mitochondrial D-loop sequencing to analyze the chicken's genetic diversity, revealing a total of 188 alleles and identifying several unique haplotypes, indicating a high level of genetic variation.
  • * Genetic introgression from red junglefowl and other indigenous breeds suggests that the Mae Hong Son chicken was domesticated over 200-300 years, showcasing its adaptation to highland environments and its cultural significance in Northern Thai communities.
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