A Multi-view Molecular Pre-training with Generative Contrastive Learning.

Molecular representation learning can preserve meaningful molecular structures as embedding vectors, which is a necessary prerequisite for molecular property prediction. Yet, learning how to accurately represent molecules remains challenging. Previous approaches to learning molecular representations in an end-to-end manner potentially suffered information loss while neglecting the utilization of molecular generative representations.

GraphsformerCPI: Graph Transformer for Compound-Protein Interaction Prediction.

Accurately predicting compound-protein interactions (CPI) is a critical task in computer-aided drug design. In recent years, the exponential growth of compound activity and biomedical data has highlighted the need for efficient and interpretable prediction approaches. In this study, we propose GraphsformerCPI, an end-to-end deep learning framework that improves prediction performance and interpretability.

Oil/Salt Use Assessment of Chinese-Style Canteens Based on Consumers' Perception of the Nutrition Environment.

Excess cooking oil and salt use in catering services contributes to obesity and cardiovascular disease, but the assessment of oil/salt use has been a challenge in nutrition environment measurement. We conducted a knowledge, attitude, and practice survey on 250 respondents in five university canteens at China Agricultural University, Beijing, China. Using on-site tools including a newly developed Likert scale and the previously tested Oil-Salt Visual Analogue Scale (OS-VAS), the respondents were asked to evaluate their personal taste, their impression of the oil/salt status of canteen dishes, and their attitude toward oil/salt reduction.

NoiseMol: A noise-robusted data augmentation via perturbing noise for molecular property prediction.

Simplified Molecular-Input Line-Entry System (SMILES) is one of a widely used molecular representation methods for molecular property prediction. We conjecture that all the characters in the SMILES string of a molecule are essential for making up the molecules, but most of them make little contribution to determining a particular property of the molecule. Therefore, we verified the conjecture in the pre-experiment.

MolRoPE-BERT: An enhanced molecular representation with Rotary Position Embedding for molecular property prediction.

Molecular property prediction is a significant task in drug discovery. Most deep learning-based computational methods either develop unique chemical representation or combine complex model. However, researchers are less concerned with the possible advantages of enormous quantities of unlabeled molecular data.

A deep learning method for predicting molecular properties and compound-protein interactions.

Predicting molecular properties and compound-protein interactions (CPIs) are two important areas of drug design and discovery. They are also an essential way to discover lead compounds in virtual screening. Recently, in silico methods based on deep learning have demonstrated excellent performance in various challenges.