Publications by authors named "Tomas Bohr"

The glymphatic system of fluid flow through brain tissue may clear amyloid-β during sleep and as such underlie the need for sleep. Dysfunctional glymphatic transport has been implicated in pathological conditions ranging from stroke and dementia to psychiatric illnesses. To date, the fastest observed in-vivo brain flows have been reported after the manipulation of blood osmotic pressures.

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Characteristic of all conifer needles, the transfusion tissue mediates the radial transport of water and sugar between the endodermis and axial vasculature. Physical constraints imposed by the needle's linear geometry introduce two potential extravascular bottlenecks where the opposition of sugar and water flows may frustrate sugar export: one at the vascular access point and the other at the endodermis. We developed a network model of the transfusion tissue to explore how its structure and composition affect the delivery of sugars to the axial phloem.

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The vasculature along conifer needles is fundamentally different from that in angiosperm leaves as it contains a unique transfusion tissue inside the bundle sheath. In this study, we used specific tracers to identify the pathway of photoassimilates from mesophyll to phloem, and the opposing pathway of nutrients from xylem to mesophyll. For symplasmic transport we applied esculin to the tip of attached pine needles and followed its movement down the phloem.

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The glymphatic system of cerebrospinal fluid transport through the perivascular spaces of the brain has been implicated in metabolic waste clearance, neurodegenerative diseases and in acute neurological disorders such as stroke and cardiac arrest. In other biological low-pressure fluid pathways such as in veins and the peripheral lymphatic system, valves play an important role in ensuring the flow direction. Though fluid pressure is low in the glymphatic system and directed bulk flow has been measured in pial and penetrating perivascular spaces, no valves have yet been identified.

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We review theoretical and numerical models of the glymphatic system, which circulates cerebrospinal fluid and interstitial fluid around the brain, facilitating solute transport. Models enable hypothesis development and predictions of transport, with clinical applications including drug delivery, stroke, cardiac arrest, and neurodegenerative disorders like Alzheimer's disease. We sort existing models into broad categories by anatomical function: Perivascular flow, transport in brain parenchyma, interfaces to perivascular spaces, efflux routes, and links to neuronal activity.

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We study the viscous dissipation in pipe flows in long channels with porous or semipermeable walls, taking into account both the dissipation in the bulk of the channel and in the pores. We give simple closed-form expressions for the dissipation in terms of the axially varying flow rate Q(x) and the pressure p(x), generalizing the well-known expression W[over ̇]=QΔp=RQ^{2} for the case of impenetrable walls with constant Q, pressure difference Δp between the ends of the pipe and resistance R. When the pressure p_{0} outside the pipe is constant, the result is the straightforward generalization W[over ̇]=Δ[(p-p_{0})Q].

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The green leaves of plants are optimised for carbon fixation and the production of sugars, which are used as central units of carbon and energy throughout the plant. However, there are physical limits to this optimisation that remain insufficiently understood. Here, quantitative anatomical analysis combined with mathematical modelling and sugar transport rate measurements were used to determine how effectively sugars are exported from the needle-shaped leaves of conifers in relation to leaf length.

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Article Synopsis
  • Plant leaf size can vary greatly, from a few millimeters up to over a meter, but conifer leaves are typically shorter, with most needles around 6 cm.
  • The limited size of conifer needles is due to a restriction in sugar export caused by the inability to generate enough pressure for vascular flow, leading to stagnant fluid near the tip of the needle.
  • Research predicts a maximum effective needle size of 5 cm, which could explain why conifers generally have smaller leaves compared to angiosperms, offering a biophysical perspective on this difference.
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In trees, carbohydrates produced in photosynthesizing leaves are transported to roots and other sink organs over distances of up to 100 m inside a specialized transport tissue, the phloem. Angiosperm and gymnosperm trees have a fundamentally different phloem anatomy with respect to cell size, shape and connectivity. Whether these differences have an effect on the physiology of carbohydrate transport, however, is not clear.

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Plants create sugar in the mesophyll cells of their leaves by photosynthesis. This sugar, mostly sucrose, has to be loaded via the bundle sheath into the phloem vascular system (the sieve elements), where it is distributed to growing parts of the plant. We analyze the feasibility of a particular loading mechanism, active symplasmic loading, also called the polymer trap mechanism, where sucrose is transformed into heavier sugars, such as raffinose and stachyose, in the intermediary-type companion cells bordering the sieve elements in the minor veins of the phloem.

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We present experiments and theory for flows of sugar or salt solutions in cylindrical tubes with semipermeable walls (hollow fiber membranes) immersed in water, quantifying the strength of the osmotic driving force in relation to the dimensionless parameters that specify the system. The pumping efficiency of these flows is limited by the presence of "unstirred" concentration boundary layers near the tube walls, and our primary aim is to understand and quantify these layers and their effect on the flow. We measure the outlet flow rate Q(out) while varying the inlet flow rate Q(*), concentration c(*), and tube length L, and map out the dependence of the flow rate gain γ=Q(out)/Q(*)-1 on these parameters.

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Gravitropism, the slow reorientation of plant growth in response to gravity, is a key determinant of the form and posture of land plants. Shoot gravitropism is triggered when statocysts sense the local angle of the growing organ relative to the gravitational field. Lateral transport of the hormone auxin to the lower side is then enhanced, resulting in differential gene expression and cell elongation causing the organ to bend.

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Sieve plates have an enormous impact on the efficiency of the phloem vascular system of plants, responsible for the distribution of photosynthetic products. These thin plates, which separate neighboring phloem cells, are perforated by a large number of tiny sieve pores and are believed to play a crucial role in protecting the phloem sap from intruding animals by blocking flow when the phloem cell is damaged. The resistance to the flow of viscous sap in the phloem vascular system is strongly affected by the presence of the sieve plates, but the hydrodynamics of the flow through them remains poorly understood.

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The transport of sugars in the phloem vascular system of plants is believed to be driven by osmotic pressure differences according to the Münch hypothesis. Thus, the translocation process is viewed as a passive reaction to the active sugar loading in the leaves and sugar unloading in roots and other places of growth or storage. The modelling of the loading and unloading mechanism is thus a key ingredient in the mathematical description of such flows, but the influence of particular choices of loading functions on the translocation characteristics is not well understood.

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Model for polygonal hydraulic jumps.

Phys Rev E Stat Nonlin Soft Matter Phys

March 2012

We propose a phenomenological model for the polygonal hydraulic jumps discovered by Ellegaard and co-workers [Nature (London) 392, 767 (1998); Nonlinearity 12, 1 (1999); Physica B 228, 1 (1996)], based on the known flow structure for the type-II hydraulic jumps with a "roller" (separation eddy) near the free surface in the jump region. The model consists of mass conservation and radial force balance between hydrostatic pressure and viscous stresses on the roller surface. In addition, we consider the azimuthal force balance, primarily between pressure and viscosity, but also including nonhydrostatic pressure contributions from surface tension in light of recent observations by Bush and co-workers [J.

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Since Münch in the 1920s proposed that sugar transport in the phloem vascular system is driven by osmotic pressure gradients, his hypothesis has been strongly supported by evidence from herbaceous angiosperms. Experimental constraints made it difficult to test this proposal in large trees, where the distance between source and sink might prove incompatible with the hypothesis. Recently, the theoretical optimization of the Münch mechanism was shown to lead to surprisingly simple predictions for the dimensions of the phloem sieve elements in relation to that of fast growing angiosperms.

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Many marine zooplankters, particularly among copepods, are "ambush feeders" that passively wait for their prey and capture them by fast surprise attacks. This strategy must be very demanding in terms of muscle power and sensing capabilities, but the detailed mechanisms of the attacks are unknown. Using high-speed video we describe how copepods perform spectacular attacks by precision maneuvering during a rapid jump.

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We have fabricated lab-on-a-chip systems with microchannels separated by integrated membranes allowing for osmotically driven microflows. We have investigated these flows experimentally by studying the dynamics and structure of the front of a sugar solution travelling in 200 microm wide and 50-200 microm deep microchannels. We find that the sugar front travels at a constant speed, and that this speed is proportional to the concentration of the sugar solution and inversely proportional to the depth of the channel.

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We create air bubbles at the tip of a "bathtub vortex" which reaches to a finite depth. The bathtub vortex is formed by letting water drain through a small hole at the bottom of a rotating cylindrical container. The tip of the needlelike surface dip is unstable at high rotation rates and releases bubbles which are carried down by the flow.

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We present an amplitude equation for sand ripples under oscillatory flow in a situation where the sand is moving in a narrow channel and the height profile is practically one dimensional. The equation has the form ht = - epsilon(h-h)+((hx)2-1)hxx-hxxxx+delta((hx)2)xx which, due to the first term, is neither completely local (it has long-range coupling through the average height h) nor has local sand conservation. We argue that this is reasonable and show that the equation compares well with experimental observations in narrow channels.

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We report a novel and spectacular instability of a fluid surface in a rotating system. In a flow driven by rotating the bottom plate of a partially filled, stationary cylindrical container, the shape of the free surface can spontaneously break the axial symmetry and assume the form of a polygon rotating rigidly with a speed different from that of the plate. With water, we have observed polygons with up to 6 corners.

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Shape and stability of a viscous thread.

Phys Rev E Stat Nonlin Soft Matter Phys

May 2005

When a viscous fluid, like oil or syrup, streams from a small orifice and falls freely under gravity, it forms a long slender thread, which can be maintained in a stable, stationary state with lengths up to several meters. We discuss the shape of such liquid threads and their surprising stability. The stationary shapes are discussed within the long-wavelength approximation and compared to experiments.

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We study the transition from laminar to chaotic behavior in deterministic chaotic coupled map lattices and in an extension of the stochastic Domany-Kinzel cellular automaton [E. Domany and W. Kinzel, Phys.

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We investigate the motion of infinitesimal particles in the flow field inside the fluid under a traveling surface wave. It is shown that, even for two-dimensional waves, a superposition of two or more traveling harmonic waves is enough to generate chaotic particle motion, i.e.

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